Factsheet for VIT_16s0013g00170.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
endoplasmic reticulum 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_02s0012g01860.t01
VIT_03s0038g04360.t01
VIT_06s0080g00970.t01
VIT_08s0007g01140.t01
VIT_09s0002g02400.t01
VIT_11s0016g00400.t01
VIT_11s0016g03780.t01
VIT_16s0050g01050.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G09180.1	VIT_16s0050g01050.t01	AT4G25660.1	21798944
AT1G09180.1	VIT_16s0050g01050.t01	AT4G25680.1	21798944
AT1G09180.1	VIT_08s0007g01140.t01	AT5G02040.1	21798944
AT1G56330.1	VIT_11s0016g03780.t01	AT2G20130.1	21798944
AT1G56330.1	VIT_09s0002g02400.t01	AT3G13710.1	21798944
AT1G56330.1	VIT_09s0002g02400.t01	AT3G13720.1	21798944
AT1G56330.1	VIT_11s0016g00400.t01	AT3G43230.1	21798944
AT1G56330.1	VIT_02s0012g01860.t01	AT4G17720.1	21798944
AT1G56330.1	VIT_06s0080g00970.t01	AT5G22290.1	21798944
AT4G02080.1	VIT_03s0038g04360.t01	AT1G22920.1	21798944
AT4G02080.1	VIT_03s0038g04360.t01	AT1G71230.1	21798944
AT4G02080.1	VIT_09s0002g02400.t01	AT3G13720.1	21798944
AT4G02080.1	VIT_16s0050g01050.t01	AT4G25680.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT1G02620.1	Thale cress	endoplasmic reticulum	85.19	75.41
VIT_07s0005g01330.t01	Wine grape	endoplasmic reticulum, extracellular	95.37	53.37
KRH68446	Soybean	endoplasmic reticulum	89.81	50.26
KRG96730	Soybean	endoplasmic reticulum	89.81	50.26
CDY22027	Canola	endoplasmic reticulum, extracellular	89.81	50.26
VIT_05s0077g01230.t01	Wine grape	endoplasmic reticulum, extracellular	89.81	50.26
CDX90955	Canola	endoplasmic reticulum, extracellular	89.81	50.26
Bra000895.1-P	Field mustard	endoplasmic reticulum, extracellular	89.81	50.26
CDX91807	Canola	endoplasmic reticulum, extracellular	88.89	49.74
AT4G02080.1	Thale cress	endoplasmic reticulum	88.89	49.74
Zm00001d040752_P001	Maize	endoplasmic reticulum, extracellular	87.96	49.22
AT1G56330.1	Thale cress	endoplasmic reticulum	87.96	49.22
EES00709	Sorghum	endoplasmic reticulum, extracellular	87.96	49.22
AT3G62560.1	Thale cress	endoplasmic reticulum	87.96	49.22
CDY59269	Canola	endoplasmic reticulum, extracellular	87.96	48.72
Bra027937.1-P	Field mustard	endoplasmic reticulum, extracellular	87.96	48.72
CDY41713	Canola	endoplasmic reticulum, extracellular	87.96	48.72
TraesCS3B01G221700.1	Wheat	endoplasmic reticulum, extracellular	87.04	48.7
TraesCS3A01G193800.1	Wheat	golgi	87.04	48.7
KRG92955	Soybean	endoplasmic reticulum, extracellular	87.04	48.7
KRH33832	Soybean	endoplasmic reticulum	87.04	48.7
CDY39001	Canola	endoplasmic reticulum, extracellular	87.04	48.21
Bra038169.1-P	Field mustard	endoplasmic reticulum, extracellular	87.04	48.21
TraesCS3D01G196200.1	Wheat	endoplasmic reticulum, extracellular	86.11	48.19
Solyc01g100350.2.1	Tomato	plastid	86.11	48.19
PGSC0003DMT400007183	Potato	endoplasmic reticulum, golgi	86.11	48.19
CDY65544	Canola	endoplasmic reticulum, extracellular	85.19	48.17
TraesCS5A01G089200.1	Wheat	golgi	85.19	47.67
Os01t0338000-01	Rice	plasma membrane	85.19	47.67
TraesCS5D01G101300.1	Wheat	golgi	84.26	47.15
TraesCS3B01G203800.1	Wheat	endoplasmic reticulum	84.26	47.15
TraesCS3A01G172900.1	Wheat	golgi	84.26	47.15
AT1G09180.1	Thale cress	extracellular	84.26	47.15
KXG23692	Sorghum	endoplasmic reticulum, extracellular	84.26	47.15
CDX93520	Canola	endoplasmic reticulum, golgi	84.26	47.15
CDX95000	Canola	endoplasmic reticulum, golgi	84.26	47.15
CDY31105	Canola	endoplasmic reticulum, golgi	84.26	47.15
Bra018576.1-P	Field mustard	endoplasmic reticulum, golgi	84.26	47.15
HORVU3Hr1G035000.2	Barley	plasma membrane	84.26	47.15
TraesCS5B01G095200.1	Wheat	endoplasmic reticulum, extracellular	83.33	46.63
Os12t0560300-01	Rice	plasma membrane	83.33	46.63
Zm00001d040278_P001	Maize	extracellular	83.33	46.63
EES02699	Sorghum	endoplasmic reticulum, extracellular	83.33	46.63
CDY32159	Canola	endoplasmic reticulum, golgi	83.33	46.63
Os01t0254000-01	Rice	plasma membrane	82.41	46.11
TraesCS3D01G179300.1	Wheat	endoplasmic reticulum, extracellular	84.26	45.27
PGSC0003DMT400068658	Potato	endoplasmic reticulum, extracellular	80.56	45.08
Solyc01g060130.2.1	Tomato	endoplasmic reticulum, extracellular	79.63	44.56
HORVU3Hr1G045150.3	Barley	plastid	86.11	41.7
TraesCS7B01G236300.1	Wheat	cytosol	73.15	40.93
Os06t0225000-00	Rice	endoplasmic reticulum	73.15	40.72
HORVU7Hr1G080190.1	Barley	endoplasmic reticulum	71.3	39.9
VIT_15s0024g01360.t01	Wine grape	cytosol	17.59	39.58
EES15193	Sorghum	endoplasmic reticulum	71.3	39.49
TraesCS7D01G332100.1	Wheat	endoplasmic reticulum	70.37	39.38
Zm00001d049068_P001	Maize	cytosol	70.37	39.18
KXG28257	Sorghum	endoplasmic reticulum	69.44	38.66
VIT_05s0165g00230.t01	Wine grape	cytosol	59.26	37.65
VIT_14s0060g01340.t01	Wine grape	endoplasmic reticulum, extracellular	72.22	32.91
Zm00001d009211_P001	Maize	mitochondrion	87.96	29.05
VIT_02s0033g01130.t01	Wine grape	cytosol	42.59	25.84
Bra036294.1-P	Field mustard	endoplasmic reticulum	88.89	23.53
CDY07095	Canola	endoplasmic reticulum	88.89	23.47
VIT_00s0601g00030.t01	Wine grape	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	35.19	20.65
VIT_14s0006g01090.t01	Wine grape	cytosol	30.56	20.0
VIT_03s0091g00970.t01	Wine grape	cytosol	33.33	19.57
GSMUA_Achr11P...	Banana	mitochondrion, plastid	25.0	11.11

Protein Annotations

EntrezGene:100252815	wikigene:100252815	MapMan:22.4.2.1	Gene3D:3.40.50.300	ProteinID:CCB61167	ProteinID:CCB61167.1
UniProt:F6I2K0	EMBL:FN596738	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005525
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006810	GO:GO:0006886	GO:GO:0008150
InterPro:IPR006687	EntrezGene:LOC100252815	wikigene:LOC100252815	InterPro:P-loop_NTPase	PFAM:PF00025	PRINTS:PR00328
PFscan:PS51422	PANTHER:PTHR11711	PANTHER:PTHR11711:SF165	SMART:SM00178	SUPFAM:SSF52540	InterPro:Small_GTPase_ARF/SAR
InterPro:Small_GTPase_SAR1	UniParc:UPI0002109198	ArrayExpress:VIT_16s0013g00170	EnsemblPlantsGene:VIT_16s0013g00170	EnsemblPlants:VIT_16s0013g00170.t01	RefSeq:XP_002277350
RefSeq:XP_002277350.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr16:-:5051684..5052277

Molecular Weight (calculated)

12183.7 Da

IEP (calculated)

4.679

GRAVY (calculated)

0.009

Length

108 amino acids

Sequence
(BLAST)

001: MKVDEVVYLV DAYDKERFAE SKKELDALLS DEALANVPFL VLGNKIDILY AASEDELRYH LGLTNFITGK GKVNLADSNV CPLEVFMCSI VHKMGYGDGF
101: KWLSQYIK

Best Arabidopsis Sequence Match ( AT4G02080.1 )
(BLAST)

001: MFMIDWFYGV LASLGLWQKE AKILFLGLDN AGKTTLLHML KDERLVQHQP TQHPTSEELS IGKIKFKAFD LGGHQIARRV WKDYYAKVDA VVYLVDAYDK
101: ERFAESKKEL DALLSDESLA SVPFLILGNK IDIPYAASED ELRYHLGLSN FTTGKGKVNL TDSNVRPLEV FMCSIVRKMG YGEGFKWVSQ YIK

Arabidopsis Description

SAR1ASAR2 [Source:UniProtKB/TrEMBL;Acc:A0A178V5S8]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.