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Sorghum
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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum

Predictor Summary:
  • nucleus 1
  • cytosol 1
  • extracellular 3
  • endoplasmic reticulum 4
  • vacuole 3
  • plasma membrane 3
  • golgi 3
  • plastid 1
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum
Any Predictor:cytosol, nucleus, plastid, secretory
BaCelLo:nucleus
MultiLoc:cytosol
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:plastid
YLoc:endoplasmic reticulum
PPI

Inferred distinct locusB in Crop

locusBlocations
EER87703
EER89059
EER96209
EES00126
EES03822
EES03880
EES12769
EES15518
EES19854
KXG22142
KXG22202
KXG27287
KXG38626
OQU77594
OQU77712
OQU79263
OQU82692
OQU84787
OQU85574
OQU90261

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G09180.1 EER87703 AT4G25660.1 21798944
AT1G09180.1 EER87703 AT4G25680.1 21798944
AT1G09180.1 EES03822 AT5G01640.1 21798944
AT1G09180.1 EES15518 AT5G01640.1 21798944
AT1G09180.1 KXG22202 AT5G01640.1 21798944
AT1G09180.1 KXG38626 AT5G01640.1 21798944
AT1G09180.1 OQU79263 AT5G01640.1 21798944
AT1G09180.1 OQU82692 AT5G01640.1 21798944
AT1G09180.1 EES03880 AT5G02040.1 21798944
AT1G09180.1 KXG22142 AT5G02040.1 21798944
AT1G56330.1 EES19854 AT2G20130.1 21798944
AT1G56330.1 OQU84787 AT2G20130.1 21798944
AT1G56330.1 EES00126 AT3G13710.1 21798944
AT1G56330.1 OQU77594 AT3G13710.1 21798944
AT1G56330.1 EES00126 AT3G13720.1 21798944
AT1G56330.1 OQU77594 AT3G13720.1 21798944
AT1G56330.1 EER96209 AT3G43230.1 21798944
AT1G56330.1 OQU77712 AT3G43230.1 21798944
AT1G56330.1 OQU90261 AT3G43230.1 21798944
AT1G56330.1 EER89059 AT4G17720.1 21798944
AT1G56330.1 EES12769 AT4G17720.1 21798944
AT1G56330.1 OQU85574 AT4G17720.1 21798944
AT1G56330.1 EES03822 AT5G01640.1 21798944
AT1G56330.1 EES15518 AT5G01640.1 21798944
AT1G56330.1 KXG22202 AT5G01640.1 21798944
AT1G56330.1 KXG38626 AT5G01640.1 21798944
AT1G56330.1 OQU79263 AT5G01640.1 21798944
AT1G56330.1 OQU82692 AT5G01640.1 21798944
AT4G02080.1 KXG27287 AT1G22920.1 21798944
AT4G02080.1 KXG27287 AT1G71230.1 21798944
AT4G02080.1 EES00126 AT3G13720.1 21798944
AT4G02080.1 OQU77594 AT3G13720.1 21798944
AT4G02080.1 EER87703 AT4G25680.1 21798944
AT4G02080.1 EES03822 AT5G01640.1 21798944
AT4G02080.1 EES15518 AT5G01640.1 21798944
AT4G02080.1 KXG22202 AT5G01640.1 21798944
AT4G02080.1 KXG38626 AT5G01640.1 21798944
AT4G02080.1 OQU79263 AT5G01640.1 21798944
AT4G02080.1 OQU82692 AT5G01640.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d049068_P001 Maize cytosol 93.3 93.3
EES15193 Sorghum endoplasmic reticulum 91.75 91.28
Os06t0225000-00 Rice endoplasmic reticulum 82.99 82.99
EES02699 Sorghum endoplasmic reticulum, extracellular 80.93 81.35
Solyc01g100350.2.1 Tomato plastid 79.9 80.31
PGSC0003DMT400007183 Potato endoplasmic reticulum, golgi 79.9 80.31
CDY65544 Canola endoplasmic reticulum, extracellular 78.87 80.1
PGSC0003DMT400018800 Potato cytosol 79.38 79.79
AT3G62560.1 Thale cress endoplasmic reticulum 79.38 79.79
Solyc06g009660.2.1 Tomato extracellular 79.38 79.79
VIT_07s0005g01330.t01 Wine grape endoplasmic reticulum, extracellular 78.87 79.27
PGSC0003DMT400023327 Potato endoplasmic reticulum, extracellular 78.87 79.27
PGSC0003DMT400068658 Potato endoplasmic reticulum, extracellular 78.87 79.27
Solyc01g079540.2.1 Tomato plastid 78.87 79.27
AT1G56330.1 Thale cress endoplasmic reticulum 78.87 79.27
EES00709 Sorghum endoplasmic reticulum, extracellular 78.87 79.27
VIT_05s0077g01230.t01 Wine grape endoplasmic reticulum, extracellular 78.35 78.76
Solyc01g060130.2.1 Tomato endoplasmic reticulum, extracellular 78.35 78.76
KXG23692 Sorghum endoplasmic reticulum, extracellular 78.35 78.76
CDY41713 Canola endoplasmic reticulum, extracellular 78.87 78.46
CDY59269 Canola endoplasmic reticulum, extracellular 78.87 78.46
CDY39001 Canola endoplasmic reticulum, extracellular 78.87 78.46
Bra027937.1-P Field mustard endoplasmic reticulum, extracellular 78.87 78.46
Bra038169.1-P Field mustard endoplasmic reticulum, extracellular 78.87 78.46
AT4G02080.1 Thale cress endoplasmic reticulum 77.84 78.24
Bra000895.1-P Field mustard endoplasmic reticulum, extracellular 77.84 78.24
Bra018576.1-P Field mustard endoplasmic reticulum, golgi 77.84 78.24
CDX90955 Canola endoplasmic reticulum, extracellular 77.84 78.24
KRG96730 Soybean endoplasmic reticulum 77.84 78.24
CDX93520 Canola endoplasmic reticulum, golgi 77.84 78.24
HORVU7Hr1G080190.1 Barley endoplasmic reticulum 77.84 78.24
CDX95000 Canola endoplasmic reticulum, golgi 77.84 78.24
TraesCS7D01G332100.1 Wheat endoplasmic reticulum 77.84 78.24
CDY22027 Canola endoplasmic reticulum, extracellular 77.84 78.24
CDY31105 Canola endoplasmic reticulum, golgi 77.84 78.24
TraesCS7B01G236300.1 Wheat cytosol 77.84 78.24
KRH68446 Soybean endoplasmic reticulum 77.32 77.72
KRG92955 Soybean endoplasmic reticulum, extracellular 77.32 77.72
AT1G09180.1 Thale cress extracellular 77.32 77.72
KRH37008 Soybean endoplasmic reticulum 77.32 77.72
CDX91807 Canola endoplasmic reticulum, extracellular 77.32 77.72
KRH11980 Soybean endoplasmic reticulum, extracellular 77.32 77.72
CDY32159 Canola endoplasmic reticulum, golgi 77.32 77.72
KRH50759 Soybean endoplasmic reticulum 76.8 77.2
KRH02328 Soybean endoplasmic reticulum 76.8 77.2
KRH33832 Soybean endoplasmic reticulum 76.8 77.2
KRH50760 Soybean endoplasmic reticulum 76.8 77.2
GSMUA_Achr9P21350_001 Banana endoplasmic reticulum, extracellular 76.29 76.68
KRH02329 Soybean endoplasmic reticulum, extracellular 76.29 76.68
VIT_16s0013g00170.t01 Wine grape cytosol 38.66 69.44
VIT_05s0165g00230.t01 Wine grape cytosol 57.22 65.29
AT1G02620.1 Thale cress endoplasmic reticulum 39.69 63.11
VIT_14s0060g01340.t01 Wine grape endoplasmic reticulum, extracellular 70.1 57.38
VIT_02s0033g01130.t01 Wine grape cytosol 37.11 40.45
Bra036294.1-P Field mustard endoplasmic reticulum 77.32 36.76
CDY07095 Canola endoplasmic reticulum 77.32 36.67
EES05578 Sorghum cytosol 32.47 34.24
EER92687 Sorghum cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole 31.96 33.7
Protein Annotations
MapMan:22.4.2.1Gene3D:3.40.50.300UniProt:A0A1B6PRF8GO:GO:0000166GO:GO:0003674GO:GO:0005488
GO:GO:0005525GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0005783
GO:GO:0005794GO:GO:0006810GO:GO:0006886GO:GO:0008150GO:GO:0015031GO:GO:0016192
InterPro:IPR006687EnsemblPlants:KXG28257ProteinID:KXG28257ProteinID:KXG28257.1InterPro:P-loop_NTPasePFAM:PF00025
PRINTS:PR00328PFscan:PS51422PANTHER:PTHR11711PANTHER:PTHR11711:SF302SMART:SM00177SMART:SM00178
EnsemblPlantsGene:SORBI_3005G103800SUPFAM:SSF52540InterPro:Small_GTP-bd_domInterPro:Small_GTPase_ARF/SARInterPro:Small_GTPase_SAR1TIGRFAMs:TIGR00231
UniParc:UPI0003C71FACSEG:seg::::
Description
hypothetical protein
Coordinates
chr5:+:18470435..18472854
Molecular Weight (calculated)
21506.1 Da
IEP (calculated)
7.565
GRAVY (calculated)
0.020
Length
194 amino acids
Sequence
(BLAST)
001: MSFLVDWFYD MFVSLGLWQK EAKILFLGLD NAGKTTLLHM LKDERLSQHA PTQQPTSEEL SIGRIRFKAF DLGGHRIARR VWKDYYAKVD AVVYMVDAAD
101: GTRFGESKAE LGALLSDDAL AGVPFLVLGN KIDIPQAAPE HALAYYLGLA GCTTGKGTVD LAGTGVRPVE VFMCSVVRKM GYGEGFRWMS QYIK
Best Arabidopsis Sequence Match ( AT3G62560.1 )
(BLAST)
001: MFLVDWFYGV LATLGLWQKE AKILFLGLDN AGKTTLLHML KDERLVQHQP TQHPTSEELS IGKIKFKAFD LGGHQIARRV WKDYYAKVDA VVYLVDAYDK
101: ERFAESKKEL DALLSDESLA NVPFLILGNK IDIPYAASED ELRYHLGLTS FTTGKGKVNL AGTNVRPLEV FMCSIVRKMG YGEGFKWVSQ YID
Arabidopsis Description
Putative Sar1 GTP binding protein [Source:UniProtKB/TrEMBL;Acc:Q8VYP7]
SUBAcon: [endoplasmic reticulum]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.