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Sorghum
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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: peroxisome, vacuole, cytosol

Predictor Summary:
  • nucleus 1
  • cytosol 1
  • plasma membrane 2
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 2
  • golgi 1
  • peroxisome 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, peroxisome, vacuole
Any Predictor:cytosol, nucleus, peroxisome, secretory
BaCelLo:nucleus
MultiLoc:cytosol
Plant-mPloc:plasma membrane
PProwler:secretory
WoLF PSORT:vacuole
YLoc:peroxisome
PPI

Inferred distinct locusB in Crop

locusBlocations
EER89811
EES00709
EES02699
EES15193
EES19841
KXG23692
KXG28257
KXG31516
KXG33320
OQU84758

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G02040.1 EES00709 AT1G56330.1 21798944
AT5G02040.1 EES02699 AT1G56330.1 21798944
AT5G02040.1 EES15193 AT1G56330.1 21798944
AT5G02040.1 KXG23692 AT1G56330.1 21798944
AT5G02040.1 KXG28257 AT1G56330.1 21798944
AT5G02040.1 EER89811 AT5G41600.1 21798944
AT5G02040.1 EES19841 AT5G41600.1 21798944
AT5G02040.1 KXG31516 AT5G41600.1 21798944
AT5G02040.1 KXG33320 AT5G41600.1 21798944
AT5G02040.1 OQU84758 AT5G41600.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d010055_P003 Maize cytosol, peroxisome, vacuole 98.09 98.09
Os05t0455600-01 Rice cytosol, peroxisome, vacuole 96.65 96.65
TraesCS1D01G280800.1 Wheat cytosol, peroxisome, vacuole 96.17 96.17
TraesCS1B01G290700.1 Wheat cytosol, peroxisome, vacuole 96.17 96.17
TraesCS1A01G281600.1 Wheat cytosol, peroxisome, vacuole 96.17 96.17
HORVU1Hr1G072730.1 Barley cytosol, peroxisome, vacuole 96.17 96.17
EES03880 Sorghum cytosol, peroxisome, plasma membrane 90.91 90.91
VIT_08s0007g01140.t01 Wine grape cytosol, peroxisome, vacuole 84.21 84.21
CDY04976 Canola cytosol 14.83 83.78
KRH00054 Soybean cytosol, peroxisome, vacuole 81.34 81.34
KRH49188 Soybean cytosol, peroxisome, vacuole 80.86 80.86
Solyc09g011310.2.1 Tomato endoplasmic reticulum, peroxisome, vacuole 79.43 79.43
PGSC0003DMT400022726 Potato endoplasmic reticulum, peroxisome, vacuole 79.43 79.43
Solyc10g084920.1.1 Tomato cytosol, peroxisome, vacuole 78.47 78.47
PGSC0003DMT400028790 Potato cytosol, peroxisome, vacuole 78.47 78.47
CDY55115 Canola cytosol, peroxisome, vacuole 75.12 75.12
CDX80799 Canola cytosol, peroxisome, vacuole 75.12 75.12
Bra005704.1-P Field mustard cytosol, peroxisome, vacuole 75.12 75.12
AT5G02040.1 Thale cress cytosol, peroxisome, vacuole 74.16 74.16
CDX69570 Canola endoplasmic reticulum, extracellular 23.45 69.01
Bra034847.1-P Field mustard cytosol, peroxisome, vacuole 67.94 67.94
AT3G11397.1 Thale cress endoplasmic reticulum, peroxisome, plasma membrane 67.94 67.94
CDY14095 Canola cytosol, peroxisome, vacuole 67.46 67.46
CDY08532 Canola endoplasmic reticulum, peroxisome, vacuole 67.46 67.46
CDY04974 Canola cytosol, peroxisome, vacuole 66.51 66.51
CDY11345 Canola cytosol, peroxisome, vacuole 66.03 66.03
CDX80980 Canola cytosol, peroxisome, vacuole 66.03 66.03
Bra028745.1-P Field mustard cytosol, peroxisome, vacuole 66.03 66.03
Bra005872.1-P Field mustard cytosol, peroxisome, vacuole 66.03 66.03
AT5G05987.1 Thale cress cytosol, peroxisome, vacuole 66.03 66.03
CDY53323 Canola plasma membrane 56.46 63.44
GSMUA_Achr10P... Banana endoplasmic reticulum, nucleus, plasma membrane 21.53 62.5
CDX73879 Canola plastid 36.84 61.6
CDY01015 Canola cytosol 68.9 49.32
CDY16186 Canola mitochondrion 46.41 42.17
Protein Annotations
EnsemblPlants:KXG22142EnsemblPlantsGene:SORBI_3009G160200GO:GO:0005575GO:GO:0006810GO:GO:0008150GO:GO:0016020
GO:GO:0016021InterPro:Prenylated_rab_accept_PRA1PANTHER:PTHR12859PANTHER:PTHR12859:SF0PFAM:PF03208ProteinID:KXG22142
ProteinID:KXG22142.1ProteinID:OQU78121.1SEG:segTMHMM:TMhelixUniParc:UPI00022072C5UniProt:A0A1B6P942
MapMan:22.8.4.3.1:::::
Description
hypothetical protein
Coordinates
chr9:+:51791170..51796923
Molecular Weight (calculated)
24292.9 Da
IEP (calculated)
10.822
GRAVY (calculated)
0.239
Length
209 amino acids
Sequence
(BLAST)
001: MDWSAVTAED LVDALREVDW STPPRPVPEF FSRFTVPRSY SKWTSRLKCN LYYYRTNYFI LIMFILGMGF LWKPVAILAA FMTGLSIAFL NDSFAVTFNE
101: KVTRTVRQFS PHLAAKMRPP ITPVLRGRPS SKRSIHICGR PRWVFVLFFS AVSCMLWLTS CSLLTVLWAL LIALFATVLH ASFRTPNLKA RLNTFREEFR
201: AVWRNYSEL
Best Arabidopsis Sequence Match ( AT5G02040.2 )
(BLAST)
001: MDWGNVTVDD LFDALREVDW SSPPRPPSEF FSRFTVPKSV PKWDSRLKCN LYYYRTNYFI MIVVILGLGV LTRPLAIFAA LLTALSLAFL NDSFAGSFSE
101: KATRTVRRFS PQLAAKMRPP LTPVTRGRPS SKRAIHVCGQ PRWVFVLTCS LVSFALWYIS SGLLRVSVAL LIAHLATILH ASLRTPNLKA RFNTFREEFR
201: AVWRNYSEI
Arabidopsis Description
PRA1A1PRA1 family protein A1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LZM7]
SUBAcon: [peroxisome,vacuole,cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.