CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, vacuole, cytosol

Predictor Summary:

nucleus 1
cytosol 1
extracellular 1
endoplasmic reticulum 1
vacuole 2
plasma membrane 1
golgi 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, peroxisome, vacuole
Any Predictor:	cytosol, nucleus, peroxisome, vacuole
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	vacuole
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY04974	Canola	cytosol, peroxisome, vacuole	98.09	98.09
Bra028745.1-P	Field mustard	cytosol, peroxisome, vacuole	96.17	96.17
CDY11345	Canola	cytosol, peroxisome, vacuole	94.74	94.74
CDY04976	Canola	cytosol	16.75	94.59
CDX80980	Canola	cytosol, peroxisome, vacuole	93.3	93.3
AT5G05987.1	Thale cress	cytosol, peroxisome, vacuole	92.82	92.82
CDY08532	Canola	endoplasmic reticulum, peroxisome, vacuole	84.69	84.69
CDY53323	Canola	plasma membrane	71.77	80.65
CDX73879	Canola	plastid	45.93	76.8
EES03880	Sorghum	cytosol, peroxisome, plasma membrane	67.94	67.94
HORVU1Hr1G072730.1	Barley	cytosol, peroxisome, vacuole	67.46	67.46
KXG22142	Sorghum	cytosol, peroxisome, vacuole	67.46	67.46
TraesCS1A01G281600.1	Wheat	cytosol, peroxisome, vacuole	67.46	67.46
TraesCS1B01G290700.1	Wheat	cytosol, peroxisome, vacuole	67.46	67.46
TraesCS1D01G280800.1	Wheat	cytosol, peroxisome, vacuole	67.46	67.46
Zm00001d010055_P003	Maize	cytosol, peroxisome, vacuole	66.99	66.99
Os01t0847900-01	Rice	cytosol, peroxisome, plasma membrane	66.51	66.51
Os05t0455600-01	Rice	cytosol, peroxisome, vacuole	66.03	66.03
CDY55115	Canola	cytosol, peroxisome, vacuole	65.55	65.55
CDX80799	Canola	cytosol, peroxisome, vacuole	65.07	65.07
CDY01015	Canola	cytosol	85.17	60.96
CDX69570	Canola	endoplasmic reticulum, extracellular	19.62	57.75
Zm00001d042866_P001	Maize	cytosol	20.57	52.44
HORVU3Hr1G085790.1	Barley	extracellular, plasma membrane	12.44	48.15
TraesCS3B01G395800.1	Wheat	cytosol, peroxisome, vacuole	45.93	47.06
TraesCS3A01G363600.1	Wheat	cytosol, peroxisome, vacuole	47.37	42.49
TraesCS3D01G357100.1	Wheat	mitochondrion	48.33	40.56
CDY16186	Canola	mitochondrion	42.58	38.7

Protein Annotations

EnsemblPlants:CDY14095	EnsemblPlantsGene:GSBRNA2T00078634001	GO:A0A078FI43	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:Prenylated_rab_accept_PRA1	PANTHER:PTHR12859	PANTHER:PTHR12859:SF0	PFAM:PF03208	ProteinID:CDY14095	ProteinID:CDY14095.1
SEG:seg	TMHMM:TMhelix	UniParc:UPI0004EF02FD	UniProt:A0A078FI43	MapMan:22.8.4.3.1	:

Description

BnaC02g02120DPRA1 family protein [Source:UniProtKB/TrEMBL;Acc:A0A078FI43]

Coordinates

chrLK032040:-:418429..420016

Molecular Weight (calculated)

24178.7 Da

IEP (calculated)

10.776

GRAVY (calculated)

0.322

Length

209 amino acids

Sequence
(BLAST)

001: MDWDNVAAED VIEALREVEW STPPRSFGEF FSRFAFPRSF SKWKSRLKCN LYYYRTNYFI LVIFVLGLAL ITRPLAIVGA AFTALSIAFL NDSFAATFNE
101: KFIRTIRLFS PHLAAKMRPP HMPVIRGRSA ARKTVYVCGK PRWVFVVIFL TASLVMWFSS CGLLWVLYAL LTSLTLVVVH ASVRTPNLKA RLNTFREEFR
201: AVWRNYSEL

Best Arabidopsis Sequence Match ( AT5G05987.1 )
(BLAST)

001: MDWDNVAAED VIEALREVEW STPPRSFGEF FSRFAFPRSF SKWKSRLKCN LYYYRTNYFI LVIFVLGLAL VTRPLALVGA ALTALSIAFL NDSFAASFNE
101: KFIRTIRHFS PHMAAKMRPP HMPVIRGRST ARKTVYVCGK PRWVFVITFL TASLVMWFSS CGLLWVLYAL LTSLAVIIVH ASIRTPNLKA RLNTFREEFR
201: AVWRNYSEL

Arabidopsis Description

PRA1A2PRA1 family protein A2 [Source:UniProtKB/Swiss-Prot;Acc:Q8GWC3]
SUBAcon: [peroxisome,vacuole,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.