Skip to main content
crop-pal logo
Rice
Search for another protein from :
Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: peroxisome, vacuole, cytosol

Predictor Summary:
  • nucleus 1
  • cytosol 1
  • plasma membrane 2
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 2
  • golgi 1
  • peroxisome 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, peroxisome, vacuole
Any Predictor:cytosol, nucleus, peroxisome, secretory
BaCelLo:nucleus
MultiLoc:cytosol
Plant-mPloc:plasma membrane
PProwler:secretory
WoLF PSORT:vacuole
YLoc:peroxisome
PPI

Inferred distinct locusB in Crop

locusBlocations
Os01t0226300-01
Os01t0254000-01
Os01t0338000-01
Os01t0736900-01
Os02t0265900-01
Os05t0526400-01
Os06t0225000-00
Os06t0503400-01
Os12t0560300-01

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G02040.1 Os01t0254000-01 AT1G56330.1 21798944
AT5G02040.1 Os01t0338000-01 AT1G56330.1 21798944
AT5G02040.1 Os06t0225000-00 AT1G56330.1 21798944
AT5G02040.1 Os12t0560300-01 AT1G56330.1 21798944
AT5G02040.1 Os01t0226300-01 AT5G41600.1 21798944
AT5G02040.1 Os01t0736900-01 AT5G41600.1 21798944
AT5G02040.1 Os02t0265900-01 AT5G41600.1 21798944
AT5G02040.1 Os05t0526400-01 AT5G41600.1 21798944
AT5G02040.1 Os06t0503400-01 AT5G41600.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KXG22142 Sorghum cytosol, peroxisome, vacuole 96.65 96.65
HORVU1Hr1G072730.1 Barley cytosol, peroxisome, vacuole 95.69 95.69
TraesCS1D01G280800.1 Wheat cytosol, peroxisome, vacuole 95.69 95.69
TraesCS1B01G290700.1 Wheat cytosol, peroxisome, vacuole 95.69 95.69
TraesCS1A01G281600.1 Wheat cytosol, peroxisome, vacuole 95.69 95.69
Zm00001d010055_P003 Maize cytosol, peroxisome, vacuole 94.74 94.74
Os01t0847900-01 Rice cytosol, peroxisome, plasma membrane 89.0 89.0
CDY04976 Canola cytosol 14.83 83.78
VIT_08s0007g01140.t01 Wine grape cytosol, peroxisome, vacuole 81.82 81.82
KRH00054 Soybean cytosol, peroxisome, vacuole 79.43 79.43
KRH49188 Soybean cytosol, peroxisome, vacuole 78.95 78.95
Solyc09g011310.2.1 Tomato endoplasmic reticulum, peroxisome, vacuole 77.99 77.99
PGSC0003DMT400022726 Potato endoplasmic reticulum, peroxisome, vacuole 77.99 77.99
Solyc10g084920.1.1 Tomato cytosol, peroxisome, vacuole 77.03 77.03
PGSC0003DMT400028790 Potato cytosol, peroxisome, vacuole 77.03 77.03
CDY55115 Canola cytosol, peroxisome, vacuole 73.68 73.68
CDX80799 Canola cytosol, peroxisome, vacuole 73.68 73.68
Bra005704.1-P Field mustard cytosol, peroxisome, vacuole 73.68 73.68
AT5G02040.1 Thale cress cytosol, peroxisome, vacuole 72.73 72.73
AT3G11397.1 Thale cress endoplasmic reticulum, peroxisome, plasma membrane 67.94 67.94
CDX69570 Canola endoplasmic reticulum, extracellular 22.97 67.61
Bra034847.1-P Field mustard cytosol, peroxisome, vacuole 67.46 67.46
CDY08532 Canola endoplasmic reticulum, peroxisome, vacuole 66.99 66.99
CDY14095 Canola cytosol, peroxisome, vacuole 66.03 66.03
CDY04974 Canola cytosol, peroxisome, vacuole 65.55 65.55
CDY11345 Canola cytosol, peroxisome, vacuole 65.07 65.07
CDX80980 Canola cytosol, peroxisome, vacuole 65.07 65.07
Bra028745.1-P Field mustard cytosol, peroxisome, vacuole 65.07 65.07
Bra005872.1-P Field mustard cytosol, peroxisome, vacuole 65.07 65.07
AT5G05987.1 Thale cress cytosol, peroxisome, vacuole 64.59 64.59
CDY53323 Canola plasma membrane 56.46 63.44
CDX73879 Canola plastid 36.36 60.8
GSMUA_Achr10P... Banana endoplasmic reticulum, nucleus, plasma membrane 20.1 58.33
CDY01015 Canola cytosol 68.42 48.97
CDY16186 Canola mitochondrion 45.93 41.74
Protein Annotations
EMBL:AK060152EMBL:AK103269EMBL:AK105995EnsemblPlants:Os05t0455600-01EnsemblPlantsGene:Os05g0455600EntrezGene:4338980
GO:GO:0005575GO:GO:0016020GO:GO:0016021InterPro:Prenylated_rab_accept_PRA1PANTHER:PTHR12859PANTHER:PTHR12859:SF0
PFAM:PF03208ProteinID:BAF17638.2ProteinID:BAS94359.1RefSeq:XP_015640329.1SEG:segTMHMM:TMhelix
UniParc:UPI000188AC5CUniProt:B7E4Q0MapMan:22.8.4.3.1:::
Description
Prenylated rab acceptor PRA1 family protein. (Os05t0455600-01);Prenylated rab acceptor PRA1 family protein. (Os05t0455600-02)
Coordinates
chr5:+:22384138..22387806
Molecular Weight (calculated)
24268.9 Da
IEP (calculated)
10.822
GRAVY (calculated)
0.263
Length
209 amino acids
Sequence
(BLAST)
001: MDWSAVTAED LVDALREVDW STPPRPVPEF FSRFTVPRSY SKWTSRLKCN LYYYRTNYFI LIMFILGIGF IWKPVAILAA FMTGISIAFL NDSFAVTFNE
101: KVTRTVRQFS PHLAAKMRPP ITPVLRGRPS SKRSIHICGR PRWLFVLLFS AVSCMLWLTS CSLLTVLWAL LIAIFATLLH ASFRTPNLKA RLNTFREEFR
201: AVWRNYSEL
Best Arabidopsis Sequence Match ( AT5G02040.2 )
(BLAST)
001: MDWGNVTVDD LFDALREVDW SSPPRPPSEF FSRFTVPKSV PKWDSRLKCN LYYYRTNYFI MIVVILGLGV LTRPLAIFAA LLTALSLAFL NDSFAGSFSE
101: KATRTVRRFS PQLAAKMRPP LTPVTRGRPS SKRAIHVCGQ PRWVFVLTCS LVSFALWYIS SGLLRVSVAL LIAHLATILH ASLRTPNLKA RFNTFREEFR
201: AVWRNYSEI
Arabidopsis Description
PRA1A1PRA1 family protein A1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LZM7]
SUBAcon: [peroxisome,vacuole,cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.