Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, vacuole, peroxisome
Predictor Summary:
Predictor Summary:
- nucleus 1
- endoplasmic reticulum 2
- extracellular 1
- vacuole 2
- plasma membrane 1
- golgi 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G11397.1 | CDX78308 | AT5G07730.1 | 21798944 |
| AT3G11397.1 | CDX81068 | AT5G07730.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra034847.1-P | Field mustard | cytosol, peroxisome, vacuole | 99.04 | 99.04 |
| AT3G11397.1 | Thale cress | endoplasmic reticulum, peroxisome, plasma membrane | 93.3 | 93.3 |
| CDY53323 | Canola | plasma membrane | 79.9 | 89.78 |
| CDX73879 | Canola | plastid | 51.2 | 85.6 |
| CDY04974 | Canola | cytosol, peroxisome, vacuole | 84.69 | 84.69 |
| CDY14095 | Canola | cytosol, peroxisome, vacuole | 84.69 | 84.69 |
| CDY11345 | Canola | cytosol, peroxisome, vacuole | 84.21 | 84.21 |
| CDY04976 | Canola | cytosol | 14.83 | 83.78 |
| CDX80980 | Canola | cytosol, peroxisome, vacuole | 83.73 | 83.73 |
| CDY01015 | Canola | cytosol | 97.61 | 69.86 |
| EES03880 | Sorghum | cytosol, peroxisome, plasma membrane | 68.9 | 68.9 |
| TraesCS1D01G280800.1 | Wheat | cytosol, peroxisome, vacuole | 68.42 | 68.42 |
| HORVU1Hr1G072730.1 | Barley | cytosol, peroxisome, vacuole | 68.42 | 68.42 |
| TraesCS1B01G290700.1 | Wheat | cytosol, peroxisome, vacuole | 68.42 | 68.42 |
| TraesCS1A01G281600.1 | Wheat | cytosol, peroxisome, vacuole | 68.42 | 68.42 |
| CDX80799 | Canola | cytosol, peroxisome, vacuole | 67.94 | 67.94 |
| CDY55115 | Canola | cytosol, peroxisome, vacuole | 67.46 | 67.46 |
| KXG22142 | Sorghum | cytosol, peroxisome, vacuole | 67.46 | 67.46 |
| Os01t0847900-01 | Rice | cytosol, peroxisome, plasma membrane | 67.46 | 67.46 |
| Os05t0455600-01 | Rice | cytosol, peroxisome, vacuole | 66.99 | 66.99 |
| Zm00001d010055_P003 | Maize | cytosol, peroxisome, vacuole | 66.51 | 66.51 |
| CDX69570 | Canola | endoplasmic reticulum, extracellular | 21.53 | 63.38 |
| Zm00001d042866_P001 | Maize | cytosol | 20.1 | 51.22 |
| TraesCS3B01G395800.1 | Wheat | cytosol, peroxisome, vacuole | 46.41 | 47.55 |
| HORVU3Hr1G085790.1 | Barley | extracellular, plasma membrane | 11.48 | 44.44 |
| TraesCS3A01G363600.1 | Wheat | cytosol, peroxisome, vacuole | 47.37 | 42.49 |
| TraesCS3D01G357100.1 | Wheat | mitochondrion | 48.33 | 40.56 |
| CDY16186 | Canola | mitochondrion | 44.02 | 40.0 |
Protein Annotations
| EnsemblPlants:CDY08532 | EnsemblPlantsGene:GSBRNA2T00000312001 | GO:A0A078F618 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| InterPro:Prenylated_rab_accept_PRA1 | PANTHER:PTHR12859 | PANTHER:PTHR12859:SF0 | PFAM:PF03208 | ProteinID:CDY08532 | ProteinID:CDY08532.1 |
| SEG:seg | TMHMM:TMhelix | UniParc:UPI0004EEB4C8 | UniProt:A0A078F618 | MapMan:22.8.4.3.1 | : |
Description
BnaA05g27680DPRA1 family protein [Source:UniProtKB/TrEMBL;Acc:A0A078F618]
Coordinates
chrLK031986:-:598114..600009
Molecular Weight (calculated)
23898.5 Da
IEP (calculated)
10.772
GRAVY (calculated)
0.368
Length
209 amino acids
Sequence
(BLAST)
(BLAST)
001: MDWDSVAAGD VVEALREVEW STSPRSLAEF FSRFAFPRSF SKWMSRLKCN LYYYRTNYFI LLIFVLGLAL ITRPLAIIGA ALTALSLAFL NDSFAATFNE
101: KAIRTIRQFS PHLAAKMRPP HMPVIRGRSA SRKTVYVCGQ PRLVFVLLGL TASFVLWFAS CGLLWILYAL ATALLMIMLH ASLRTPNLKA RLNTFREEFR
201: AVWRNYSEL
101: KAIRTIRQFS PHLAAKMRPP HMPVIRGRSA SRKTVYVCGQ PRLVFVLLGL TASFVLWFAS CGLLWILYAL ATALLMIMLH ASLRTPNLKA RLNTFREEFR
201: AVWRNYSEL
001: MDWDSVAAED VIEALREVEW SASPRSLAEF FSRFAFPRSF SKWMSRLKCN LYYYRTNYFI LFVFVLGLAL ITRPLAILGA ALTALSLAFL NDSFAATFNE
101: KMIRTIRHFS PHLAAKMRPP HMPVIRGRSA TRKTVYICGQ PRLVFVLLGL TASFVLWFTS CGLLWVLYAL TTALLMILLH ASLRTPNLKA RLNTFREEFR
201: AVWRNYSEL
101: KMIRTIRHFS PHLAAKMRPP HMPVIRGRSA TRKTVYICGQ PRLVFVLLGL TASFVLWFTS CGLLWVLYAL TTALLMILLH ASLRTPNLKA RLNTFREEFR
201: AVWRNYSEL
Arabidopsis Description
PRA1A3PRA1 family protein A3 [Source:UniProtKB/Swiss-Prot;Acc:Q8W115]
SUBAcon: [endoplasmic reticulum,plasma membrane,peroxisome]
SUBAcon: [endoplasmic reticulum,plasma membrane,peroxisome]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.