CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, vacuole, cytosol

Predictor Summary:

nucleus 1
cytosol 1
plasma membrane 2
extracellular 1
endoplasmic reticulum 1
vacuole 2
golgi 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, peroxisome, vacuole
Any Predictor:	cytosol, nucleus, peroxisome, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	vacuole
YLoc:	peroxisome

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX70995
CDX78308
CDX81068
CDX88803
CDX92368
CDY09128
CDY35676
CDY39001
CDY41713
CDY59269
CDY65544

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G02040.1	CDY39001	AT1G56330.1	21798944
AT5G02040.1	CDY41713	AT1G56330.1	21798944
AT5G02040.1	CDY59269	AT1G56330.1	21798944
AT5G02040.1	CDY65544	AT1G56330.1	21798944
AT5G02040.1	CDX78308	AT5G07730.1	21798944
AT5G02040.1	CDX81068	AT5G07730.1	21798944
AT5G02040.1	CDX70995	AT5G22290.1	21798944
AT5G02040.1	CDX88803	AT5G22290.1	21798944
AT5G02040.1	CDX92368	AT5G22290.1	21798944
AT5G02040.1	CDY09128	AT5G22290.1	21798944
AT5G02040.1	CDY35676	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra005704.1-P	Field mustard	cytosol, peroxisome, vacuole	100.0	100.0
CDX80799	Canola	cytosol, peroxisome, vacuole	99.04	99.04
CDX69570	Canola	endoplasmic reticulum, extracellular	30.14	88.73
AT5G02040.1	Thale cress	cytosol, peroxisome, vacuole	85.65	85.65
VIT_08s0007g01140.t01	Wine grape	cytosol, peroxisome, vacuole	81.34	81.34
CDY04976	Canola	cytosol	14.35	81.08
TraesCS1D01G280800.1	Wheat	cytosol, peroxisome, vacuole	75.12	75.12
TraesCS1B01G290700.1	Wheat	cytosol, peroxisome, vacuole	75.12	75.12
TraesCS1A01G281600.1	Wheat	cytosol, peroxisome, vacuole	75.12	75.12
Os01t0847900-01	Rice	cytosol, peroxisome, plasma membrane	75.12	75.12
KXG22142	Sorghum	cytosol, peroxisome, vacuole	75.12	75.12
HORVU1Hr1G072730.1	Barley	cytosol, peroxisome, vacuole	75.12	75.12
EES03880	Sorghum	cytosol, peroxisome, plasma membrane	74.16	74.16
Zm00001d010055_P003	Maize	cytosol, peroxisome, vacuole	74.16	74.16
Os05t0455600-01	Rice	cytosol, peroxisome, vacuole	73.68	73.68
CDY08532	Canola	endoplasmic reticulum, peroxisome, vacuole	67.46	67.46
CDY11345	Canola	cytosol, peroxisome, vacuole	66.03	66.03
CDY04974	Canola	cytosol, peroxisome, vacuole	66.03	66.03
CDX80980	Canola	cytosol, peroxisome, vacuole	66.03	66.03
CDY14095	Canola	cytosol, peroxisome, vacuole	65.55	65.55
CDY53323	Canola	plasma membrane	57.42	64.52
CDX73879	Canola	plastid	37.8	63.2
Zm00001d042866_P001	Maize	cytosol	22.97	58.54
CDY16186	Canola	mitochondrion	62.2	56.52
TraesCS3B01G395800.1	Wheat	cytosol, peroxisome, vacuole	47.85	49.02
CDY01015	Canola	cytosol	67.94	48.63
HORVU3Hr1G085790.1	Barley	extracellular, plasma membrane	11.96	46.3
TraesCS3A01G363600.1	Wheat	cytosol, peroxisome, vacuole	49.76	44.64
TraesCS3D01G357100.1	Wheat	mitochondrion	50.72	42.57

Protein Annotations

EnsemblPlants:CDY55115	EnsemblPlantsGene:GSBRNA2T00016413001	GO:A0A078IXW0	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:Prenylated_rab_accept_PRA1	PANTHER:PTHR12859	PANTHER:PTHR12859:SF0	PFAM:PF03208	ProteinID:CDY55115	ProteinID:CDY55115.1
SEG:seg	TMHMM:TMhelix	UniParc:UPI000253FA38	UniProt:A0A078IXW0	MapMan:22.8.4.3.1	:

Description

BnaA03g54940DPRA1 family protein [Source:UniProtKB/TrEMBL;Acc:A0A078IXW0]

Coordinates

chrLK033376:+:19710..21349

Molecular Weight (calculated)

23841.3 Da

IEP (calculated)

10.705

GRAVY (calculated)

0.288

Length

209 amino acids

Sequence
(BLAST)

001: MDWGNVTAED LVDALREVDW SSPPRPLSEF FSRFTVPKSL AKWDSRLKCN LYYYRTNYFI MIVFILGLGF LTRPLAILSA FLTAVTVAFL NDSFAGSFSE
101: KATRTIRRFS PQLAAKMRPP LAPVIRGRPS AKRAIYICGQ PRWVFVLISS LVSFALWYIS CGLFTVSLAL LIGLLATILH ATLRTPNLKA RLNTFREEFR
201: AVWRNYSEI

Best Arabidopsis Sequence Match ( AT5G02040.2 )
(BLAST)

001: MDWGNVTVDD LFDALREVDW SSPPRPPSEF FSRFTVPKSV PKWDSRLKCN LYYYRTNYFI MIVVILGLGV LTRPLAIFAA LLTALSLAFL NDSFAGSFSE
101: KATRTVRRFS PQLAAKMRPP LTPVTRGRPS SKRAIHVCGQ PRWVFVLTCS LVSFALWYIS SGLLRVSVAL LIAHLATILH ASLRTPNLKA RFNTFREEFR
201: AVWRNYSEI

Arabidopsis Description

PRA1A1PRA1 family protein A1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LZM7]
SUBAcon: [peroxisome,vacuole,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.