CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, vacuole, cytosol

Predictor Summary:

nucleus 1
cytosol 1
plastid 1
extracellular 1
endoplasmic reticulum 1
vacuole 2
plasma membrane 1
golgi 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, peroxisome, vacuole
Any Predictor:	cytosol, nucleus, peroxisome, plastid, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	secretory
WoLF PSORT:	vacuole
YLoc:	peroxisome

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG92955
KRG96730
KRH22653
KRH26664
KRH33832
KRH41254
KRH59988
KRH68446

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G02040.1	KRG92955	AT1G56330.1	21798944
AT5G02040.1	KRG96730	AT1G56330.1	21798944
AT5G02040.1	KRH33832	AT1G56330.1	21798944
AT5G02040.1	KRH68446	AT1G56330.1	21798944
AT5G02040.1	KRH22653	AT5G22290.1	21798944
AT5G02040.1	KRH26664	AT5G22290.1	21798944
AT5G02040.1	KRH41254	AT5G41600.1	21798944
AT5G02040.1	KRH59988	AT5G41600.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH00054	Soybean	cytosol, peroxisome, vacuole	99.52	99.52
Solyc09g011310.2.1	Tomato	endoplasmic reticulum, peroxisome, vacuole	90.43	90.43
PGSC0003DMT400022726	Potato	endoplasmic reticulum, peroxisome, vacuole	90.43	90.43
VIT_08s0007g01140.t01	Wine grape	cytosol, peroxisome, vacuole	89.95	89.95
Solyc10g084920.1.1	Tomato	cytosol, peroxisome, vacuole	87.56	87.56
PGSC0003DMT400028790	Potato	cytosol, peroxisome, vacuole	87.56	87.56
Bra005704.1-P	Field mustard	cytosol, peroxisome, vacuole	81.82	81.82
Os01t0847900-01	Rice	cytosol, peroxisome, plasma membrane	81.34	81.34
Zm00001d010055_P003	Maize	cytosol, peroxisome, vacuole	80.86	80.86
EES03880	Sorghum	cytosol, peroxisome, plasma membrane	80.86	80.86
KXG22142	Sorghum	cytosol, peroxisome, vacuole	80.86	80.86
TraesCS1D01G280800.1	Wheat	cytosol, peroxisome, vacuole	80.38	80.38
TraesCS1B01G290700.1	Wheat	cytosol, peroxisome, vacuole	80.38	80.38
TraesCS1A01G281600.1	Wheat	cytosol, peroxisome, vacuole	80.38	80.38
HORVU1Hr1G072730.1	Barley	cytosol, peroxisome, vacuole	80.38	80.38
AT5G02040.1	Thale cress	cytosol, peroxisome, vacuole	79.9	79.9
Os05t0455600-01	Rice	cytosol, peroxisome, vacuole	78.95	78.95
CDX69570	Canola	endoplasmic reticulum, extracellular	24.4	71.83
AT3G11397.1	Thale cress	endoplasmic reticulum, peroxisome, plasma membrane	71.77	71.77
Bra034847.1-P	Field mustard	cytosol, peroxisome, vacuole	71.29	71.29
Bra028745.1-P	Field mustard	cytosol, peroxisome, vacuole	69.86	69.86
AT5G05987.1	Thale cress	cytosol, peroxisome, vacuole	69.86	69.86
Bra005872.1-P	Field mustard	cytosol, peroxisome, vacuole	68.9	68.9
Zm00001d042866_P001	Maize	cytosol	23.45	59.76
HORVU3Hr1G085790.1	Barley	extracellular, plasma membrane	13.88	53.7
TraesCS3B01G395800.1	Wheat	cytosol, peroxisome, vacuole	51.2	52.45
TraesCS3A01G363600.1	Wheat	cytosol, peroxisome, vacuole	52.63	47.21
CDY16186	Canola	mitochondrion	51.2	46.52
TraesCS3D01G357100.1	Wheat	mitochondrion	53.59	44.98
GSMUA_Achr8P02510_001	Banana	extracellular	2.87	11.76

Protein Annotations

EMBL:ACUP02004340	EMBL:BT091846	EnsemblPlants:KRH49188	EnsemblPlantsGene:GLYMA_07G138300	EntrezGene:100527037	GO:GO:0005575
GO:GO:0006810	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	InterPro:Prenylated_rab_accept_PRA1	PANTHER:PTHR12859
PANTHER:PTHR12859:SF0	PFAM:PF03208	ProteinID:KRH49188	ProteinID:KRH49188.1	TMHMM:TMhelix	UniParc:UPI0001B15315
UniProt:C6T337	MapMan:22.8.4.3.1	:	:	:	:

Description

hypothetical protein

Coordinates

chr7:-:16421746..16424630

Molecular Weight (calculated)

24014.4 Da

IEP (calculated)

11.392

GRAVY (calculated)

0.230

Length

209 amino acids

Sequence
(BLAST)

001: MDWGNVTAED LIDALREVDW SSPPRPLSEF FSRFTVPRSS SKWNSRLKCN LYYYRTNYFI LIVSVLILGF LRRPLAIVAA LLTALNIAFL NDSFAGTFSE
101: KVTRTVRQFS PHLAAKMRPP LTPVIRGRPS SKRAIYICGR PRWVFVLIFS SASFFLWFVS AGLLTVLWAL AIGLLATILH ASFRTPNLKA RLNTFREEFR
201: AVWRNYSEL

Best Arabidopsis Sequence Match ( AT5G02040.2 )
(BLAST)

001: MDWGNVTVDD LFDALREVDW SSPPRPPSEF FSRFTVPKSV PKWDSRLKCN LYYYRTNYFI MIVVILGLGV LTRPLAIFAA LLTALSLAFL NDSFAGSFSE
101: KATRTVRRFS PQLAAKMRPP LTPVTRGRPS SKRAIHVCGQ PRWVFVLTCS LVSFALWYIS SGLLRVSVAL LIAHLATILH ASLRTPNLKA RFNTFREEFR
201: AVWRNYSEI

Arabidopsis Description

PRA1A1PRA1 family protein A1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LZM7]
SUBAcon: [peroxisome,vacuole,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.