Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, nucleus, plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 2
- endoplasmic reticulum 2
- plasma membrane 3
- extracellular 1
- vacuole 1
- golgi 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d042866_P001 | Maize | cytosol | 40.28 | 35.37 |
| GSMUA_Achr8P02500_001 | Banana | extracellular, golgi, peroxisome | 36.11 | 24.53 |
| GSMUA_Achr1P17300_001 | Banana | cytosol, peroxisome, plasma membrane | 63.89 | 22.01 |
| Zm00001d010055_P003 | Maize | cytosol, peroxisome, vacuole | 63.89 | 22.01 |
| KXG22142 | Sorghum | cytosol, peroxisome, vacuole | 62.5 | 21.53 |
| Os01t0847900-01 | Rice | cytosol, peroxisome, plasma membrane | 61.11 | 21.05 |
| EES03880 | Sorghum | cytosol, peroxisome, plasma membrane | 59.72 | 20.57 |
| HORVU1Hr1G072730.1 | Barley | cytosol, peroxisome, vacuole | 59.72 | 20.57 |
| TraesCS1A01G281600.1 | Wheat | cytosol, peroxisome, vacuole | 59.72 | 20.57 |
| TraesCS1B01G290700.1 | Wheat | cytosol, peroxisome, vacuole | 59.72 | 20.57 |
| TraesCS1D01G280800.1 | Wheat | cytosol, peroxisome, vacuole | 59.72 | 20.57 |
| Os05t0455600-01 | Rice | cytosol, peroxisome, vacuole | 58.33 | 20.1 |
| GSMUA_Achr8P02510_001 | Banana | extracellular | 5.56 | 7.84 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr10P00510_001 | EnsemblPlants:GSMUA_Achr10T00510_001 | EnsemblPlantsGene:GSMUA_Achr10G00510_001 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| InterPro:Prenylated_rab_accept_PRA1 | PANTHER:PTHR12859 | PANTHER:PTHR12859:SF0 | PFAM:PF03208 | SEG:seg | TMHMM:TMhelix |
| UniParc:UPI000295D8D8 | UniProt:M0RE78 | MapMan:22.8.4.3.1 | : | : | : |
Description
Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr10G00510_001]
Coordinates
chr10:-:1065897..1066518
Molecular Weight (calculated)
8250.9 Da
IEP (calculated)
9.845
GRAVY (calculated)
0.015
Length
72 amino acids
Sequence
(BLAST)
(BLAST)
1: MSSTTQSSSS DSPSPDRSYS KWNSRFKCNL YYYRTNYFIL IMFVRAMGFL SKPLAVVVAF LTGLSIAFVD ER
001: MDWDNVAAED VIEALREVEW STPPRSFGEF FSRFAFPRSF SKWKSRLKCN LYYYRTNYFI LVIFVLGLAL VTRPLALVGA ALTALSIAFL NDSFAASFNE
101: KFIRTIRHFS PHMAAKMRPP HMPVIRGRST ARKTVYVCGK PRWVFVITFL TASLVMWFSS CGLLWVLYAL LTSLAVIIVH ASIRTPNLKA RLNTFREEFR
201: AVWRNYSEL
101: KFIRTIRHFS PHMAAKMRPP HMPVIRGRST ARKTVYVCGK PRWVFVITFL TASLVMWFSS CGLLWVLYAL LTSLAVIIVH ASIRTPNLKA RLNTFREEFR
201: AVWRNYSEL
Arabidopsis Description
PRA1A2PRA1 family protein A2 [Source:UniProtKB/Swiss-Prot;Acc:Q8GWC3]
SUBAcon: [peroxisome,vacuole,cytosol]
SUBAcon: [peroxisome,vacuole,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.