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Sorghum
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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane, nucleus, cytosol

Predictor Summary:
  • cytosol 2
  • plastid 1
  • mitochondrion 1
  • plasma membrane 1
  • nucleus 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, nucleus, plasma membrane
Any Predictor:cytosol, mitochondrion, nucleus, plasma membrane, plastid
BaCelLo:cytosol
MultiLoc:cytosol
Plant-mPloc:plastid
PProwler:mitochondrion
WoLF PSORT:plasma membrane
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
EER89811
EER91363
EER92238
EER93147
EER93195
EER99823
EES00126
EES00703
EES01977
EES03240
EES03339
EES04366
EES04687
EES10337
EES11733
EES17764
EES18791
EES19652
EES19841
KXG24074
KXG31516
KXG33320
KXG37644
OQU77594
OQU81657
OQU84758
OQU86697
OQU87114
OQU88745

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT4G11220.1 EES00703 AT1G09330.1 21798944
AT4G11220.1 EES17764 AT1G09330.1 21798944
AT4G11220.1 EER93147 AT3G59500.1 21798944
AT4G11220.1 EES04687 AT3G59500.1 21798944
AT4G11220.1 KXG24074 AT3G59500.1 21798944
AT5G41600.1 EES00126 AT1G55190.1 21798944
AT5G41600.1 OQU77594 AT1G55190.1 21798944
AT5G41600.1 OQU86697 AT1G77350.1 21798944
AT5G41600.1 EES04366 AT2G03120.1 21798944
AT5G41600.1 KXG37644 AT2G03120.1 21798944
AT5G41600.1 OQU87114 AT2G03120.1 21798944
AT5G41600.1 OQU81657 AT2G39960.1 21798944
AT5G41600.1 EES10337 AT2G46890.1 21798944
AT5G41600.1 EES03240 AT3G02420.1 21798944
AT5G41600.1 EES03339 AT3G02420.1 21798944
AT5G41600.1 EES18791 AT3G02420.1 21798944
AT5G41600.1 EER92238 AT3G07950.1 21798944
AT5G41600.1 EER99823 AT3G07950.1 21798944
AT5G41600.1 EES11733 AT3G07950.1 21798944
AT5G41600.1 EES01977 AT3G27080.1 21798944
AT5G41600.1 EER93195 AT3G46060.1 21798944
AT5G41600.1 EES19652 AT3G46060.1 21798944
AT5G41600.1 OQU88745 AT3G46060.1 21798944
AT5G41600.1 EER93147 AT3G59500.1 21798944
AT5G41600.1 EES04687 AT3G59500.1 21798944
AT5G41600.1 KXG24074 AT3G59500.1 21798944
AT5G41600.1 EER89811 AT5G41600.1 21798944
AT5G41600.1 EES19841 AT5G41600.1 21798944
AT5G41600.1 KXG31516 AT5G41600.1 21798944
AT5G41600.1 KXG33320 AT5G41600.1 21798944
AT5G41600.1 OQU84758 AT5G41600.1 21798944
AT5G41600.1 EER91363 AT5G53560.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d008982_P001 Maize cytosol, nucleus, plasma membrane 92.25 93.91
Os01t0226300-01 Rice plasma membrane 58.1 92.7
Zm00001d039316_P001 Maize cytosol, nucleus, plasma membrane 94.37 87.58
TraesCS3D01G159100.1 Wheat cytosol, nucleus, plasma membrane 81.34 80.77
TraesCS3B01G178100.1 Wheat cytosol, nucleus, plasma membrane 80.63 80.07
HORVU3Hr1G030760.2 Barley mitochondrion 81.69 73.89
TraesCS3A01G151200.1 Wheat cytosol, peroxisome, plasma membrane 80.99 71.43
KRH41254 Soybean cytosol, nucleus, plasma membrane 61.27 68.5
VIT_15s0046g01760.t01 Wine grape cytosol, peroxisome, plasma membrane 61.27 68.24
KRH59988 Soybean mitochondrion 60.92 68.11
EES19841 Sorghum cytosol, nucleus, plasma membrane 60.92 67.84
KXG33320 Sorghum cytosol, nucleus, plasma membrane 60.92 67.05
VIT_02s0025g00640.t01 Wine grape cytosol, nucleus, plasma membrane 58.8 66.27
Solyc01g095200.2.1 Tomato plastid 59.86 64.64
PGSC0003DMT400000230 Potato cytosol, nucleus, plasma membrane 59.86 64.15
PGSC0003DMT400049928 Potato cytosol, nucleus, plasma membrane 57.39 63.92
CDY25557 Canola cytosol, endoplasmic reticulum, nucleus 55.99 63.35
CDY08353 Canola cytosol, endoplasmic reticulum, nucleus 55.63 63.2
CDY34396 Canola cytosol, endoplasmic reticulum, nucleus 55.63 62.95
CDY38194 Canola cytosol, nucleus, plasma membrane 55.28 62.8
KRH40357 Soybean endoplasmic reticulum 56.69 62.65
Solyc10g011870.2.1 Tomato cytosol, nucleus, plasma membrane 57.75 62.36
Solyc03g007740.2.1 Tomato nucleus 55.99 62.35
PGSC0003DMT400051387 Potato cytosol, nucleus, plasma membrane 55.99 62.35
Bra027678.1-P Field mustard cytosol, endoplasmic reticulum, nucleus 54.93 62.15
Bra027757.1-P Field mustard cytosol, endoplasmic reticulum, peroxisome 54.58 62.0
KRH00872 Soybean endoplasmic reticulum 56.34 61.78
PGSC0003DMT400074360 Potato cytosol, nucleus, plasma membrane 54.93 61.66
KRH06560 Soybean endoplasmic reticulum 55.28 61.33
PGSC0003DMT400032086 Potato cytosol, nucleus, plasma membrane 58.1 61.11
CDY52012 Canola cytosol, peroxisome, plasma membrane 54.23 60.63
Solyc06g036430.2.1 Tomato cytosol, nucleus, plasma membrane 53.87 60.47
Solyc08g081730.2.1 Tomato endoplasmic reticulum, plastid 57.04 60.0
CDY53913 Canola cytosol, peroxisome, plasma membrane 53.52 59.84
Bra003455.1-P Field mustard cytosol, peroxisome, plasma membrane 53.52 59.84
AT3G61560.1 Thale cress cytosol, nucleus, plasma membrane 53.17 59.68
AT5G41600.1 Thale cress cytosol, nucleus, plasma membrane 53.87 59.53
AT1G64090.2 Thale cress cytosol, endoplasmic reticulum, nucleus 55.28 57.93
Bra004562.1-P Field mustard cytosol, peroxisome, plasma membrane 51.06 57.77
CDX79993 Canola cytosol, peroxisome, plasma membrane 51.06 57.77
Bra019285.1-P Field mustard cytosol 53.87 57.09
CDY42012 Canola cytosol, peroxisome, plasma membrane 50.35 56.97
AT2G46170.1 Thale cress cytosol, nucleus, plasma membrane 51.06 56.86
CDY10954 Canola cytosol 53.87 56.67
CDY24806 Canola cytosol 54.58 56.57
AT4G11220.1 Thale cress nucleus 53.87 56.46
AT4G23630.2 Thale cress nucleus 54.58 56.36
KRG99174 Soybean endoplasmic reticulum, plasma membrane 17.25 56.32
CDX90792 Canola cytosol, peroxisome, plasma membrane 52.82 56.18
Bra010539.1-P Field mustard cytosol 53.17 56.13
KRH35223 Soybean cytosol, nucleus, plasma membrane 49.3 56.0
VIT_16s0050g01790.t01 Wine grape cytosol, nucleus, plasma membrane 50.0 55.91
Bra000739.1-P Field mustard cytosol 52.46 55.81
CDY41666 Canola cytosol 54.23 55.8
CDY57657 Canola cytosol, nucleus, plasma membrane 53.52 55.27
Bra013717.1-P Field mustard nucleus 53.52 55.07
CDY44123 Canola cytosol, nucleus, plasma membrane 53.52 55.07
VIT_02s0025g00590.t01 Wine grape mitochondrion 11.27 53.33
KXG21632 Sorghum nucleus, peroxisome, plasma membrane 45.77 52.42
CDY13240 Canola cytosol, peroxisome, plasma membrane 29.58 52.17
KRH48008 Soybean cytosol, peroxisome, plasma membrane 57.39 51.91
OQU84758 Sorghum cytosol, peroxisome, plasma membrane 41.55 50.86
EER89811 Sorghum peroxisome 44.37 49.22
AT4G01230.2 Thale cress cytosol 40.85 47.54
CDY48510 Canola cytosol 40.14 46.91
CDY07184 Canola cytosol, peroxisome, plasma membrane 40.14 46.91
Bra037369.1-P Field mustard cytosol 40.14 46.91
CDY05135 Canola mitochondrion 50.7 46.01
EER90788 Sorghum cytosol, nucleus, plasma membrane 38.03 43.72
CDY62522 Canola cytosol 11.62 41.25
EES19907 Sorghum cytosol, peroxisome, plasma membrane 32.39 40.71
KRG91601 Soybean mitochondrion 47.89 40.0
KXG33168 Sorghum golgi, peroxisome, plasma membrane 30.28 39.81
EES02516 Sorghum peroxisome, plastid 28.52 37.16
Bra035242.1-P Field mustard cytosol 25.7 36.5
CDX86802 Canola cytosol, nucleus, peroxisome 31.34 36.33
EES11624 Sorghum plasma membrane 23.59 33.84
EES03891 Sorghum golgi, peroxisome, plasma membrane 24.3 32.55
EER92307 Sorghum peroxisome 26.06 32.46
KXG34376 Sorghum plasma membrane 33.8 30.57
VIT_07s0031g02730.t01 Wine grape golgi, mitochondrion, nucleus, plasma membrane 19.37 30.56
CDX89122 Canola extracellular, mitochondrion 16.2 30.07
OQU78555 Sorghum extracellular 21.48 27.6
Protein Annotations
EnsemblPlants:KXG31516EnsemblPlantsGene:SORBI_3003G011100GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737
GO:GO:0005783GO:GO:0005789GO:GO:0016020GO:GO:0016021InterPro:IPR003388InterPro:Reticulon
PANTHER:PTHR10994PANTHER:PTHR10994:SF125PFAM:PF02453PFscan:PS50845ProteinID:KXG31516ProteinID:KXG31516.1
SEG:segTMHMM:TMhelixUniParc:UPI0001C80AB4UniProt:A0A1B6Q0R1MapMan:13.7.2.1:
Description
hypothetical protein
Coordinates
chr3:-:973813..975995
Molecular Weight (calculated)
31291.7 Da
IEP (calculated)
8.115
GRAVY (calculated)
-0.063
Length
284 amino acids
Sequence
(BLAST)
001: MAEQSQPHEE GGASPKHESL MEKLADKLHV GGGGKGDSSS SSDSDNDERP RPSAPPADEV KQTSFSDSAA TAAAEAKAKV FRLFGREQPI HKALGGGKPA
101: DVFLWRNRNI SAGVLGGATA IWILFELLGY HLLTFVCHGL IFSLGVLFLW SNASSFIHKA PPKIPEVIIP EDLVVNIALS TRYEINRAFA NLRQIALGRD
201: IKKFLMVIAG FWFLSVLGSC CNFLTLVYIV FVVLHTVPVL YEKYEDHIDS YGEKGWIEIK KQYAVFDEKV LSKVPRGPAK DKKH
Best Arabidopsis Sequence Match ( AT4G23630.2 )
(BLAST)
001: MAEEHKHDES VIAPEPAVEV VERESLMDKI SEKIHHGGDS SSSSSSSDDE DEKKKTKKPS SPSSSMKSKV YRLFGREQPV HKVLGGGKPA DIFMWKNKKM
101: SGGVLGGATA AWVVFELMEY HLLTLLCHVM IVVLAVLFLW SNATMFINKS PPKIPEVHIP EEPILQLASG LRIEINRGFS SLREIASGRD LKKFLIAIAG
201: LWVLSILGGC FNFLTLAYIA LVLLFTVPLA YDKYEDKVDP LGEKAMIELK KQYAVLDEKV LSKIPLGPLK NKKKD
Arabidopsis Description
RTNLB1Reticulon-like protein [Source:UniProtKB/TrEMBL;Acc:A0A178V247]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.