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Wine grape
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Wine grape
Subcellular Localization
min:
: max

 
Winner_takes_all: golgi, nucleus, plasma membrane, mitochondrion

Predictor Summary:
  • plastid 2
  • golgi 2
  • plasma membrane 3
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • mitochondrion 1
  • nucleus 1
Predictors GFP MS/MS Papers
Winner Takes All:golgi, mitochondrion, nucleus, plasma membrane
Any Predictor:mitochondrion, nucleus, plastid, secretory
BaCelLo:plastid
MultiLoc:golgi
Plant-mPloc:plasma membrane, plastid
PProwler:secretory
TargetP:mitochondrion
WoLF PSORT:nucleus
YLoc:plasma membrane
PPI

Inferred distinct locusB in Crop

locusBlocations
VIT_02s0025g00640.t01
VIT_05s0102g00730.t01
VIT_06s0004g04200.t01
VIT_06s0009g03520.t01
VIT_07s0005g01960.t01
VIT_07s0031g02730.t01
VIT_09s0002g02400.t01
VIT_13s0019g03400.t01
VIT_13s0019g04120.t01
VIT_14s0060g00830.t01
VIT_14s0066g01650.t01
VIT_14s0068g02030.t01
VIT_14s0083g00300.t01
VIT_15s0046g01760.t01
VIT_15s0048g02220.t01
VIT_16s0098g01230.t01
VIT_19s0015g00340.t01
VIT_19s0085g00270.t01

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT4G11220.1 VIT_07s0005g01960.t01 AT1G09330.1 21798944
AT4G11220.1 VIT_14s0060g00830.t01 AT1G09330.1 21798944
AT4G11220.1 VIT_05s0102g00730.t01 AT3G59500.1 21798944
AT5G41600.1 VIT_09s0002g02400.t01 AT1G55190.1 21798944
AT5G41600.1 VIT_19s0085g00270.t01 AT1G77350.1 21798944
AT5G41600.1 VIT_06s0009g03520.t01 AT2G03120.1 21798944
AT5G41600.1 VIT_13s0019g03400.t01 AT2G39960.1 21798944
AT5G41600.1 VIT_15s0048g02220.t01 AT2G46890.1 21798944
AT5G41600.1 VIT_14s0083g00300.t01 AT3G02420.1 21798944
AT5G41600.1 VIT_13s0019g04120.t01 AT3G07950.1 21798944
AT5G41600.1 VIT_19s0015g00340.t01 AT3G13175.1 21798944
AT5G41600.1 VIT_14s0068g02030.t01 AT3G27080.1 21798944
AT5G41600.1 VIT_14s0066g01650.t01 AT3G28050.1 21798944
AT5G41600.1 VIT_06s0004g04200.t01 AT3G46060.1 21798944
AT5G41600.1 VIT_05s0102g00730.t01 AT3G59500.1 21798944
AT5G41600.1 VIT_02s0025g00640.t01 AT5G41600.1 21798944
AT5G41600.1 VIT_07s0031g02730.t01 AT5G41600.1 21798944
AT5G41600.1 VIT_15s0046g01760.t01 AT5G41600.1 21798944
AT5G41600.1 VIT_16s0098g01230.t01 AT5G53560.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d020729_P001 Maize plasma membrane 17.78 33.68
Zm00001d020229_P001 Maize plasma membrane 26.11 30.92
VIT_15s0046g01760.t01 Wine grape cytosol, peroxisome, plasma membrane 42.78 30.2
Os01t0226300-01 Rice plasma membrane 29.44 29.78
VIT_02s0025g00640.t01 Wine grape cytosol, nucleus, plasma membrane 38.33 27.38
Zm00001d043551_P003 Maize plasma membrane 37.78 26.46
CDY34396 Canola cytosol, endoplasmic reticulum, nucleus 36.11 25.9
CDY25557 Canola cytosol, endoplasmic reticulum, nucleus 36.11 25.9
CDY38194 Canola cytosol, nucleus, plasma membrane 35.56 25.6
KXG33320 Sorghum cytosol, nucleus, plasma membrane 36.67 25.58
Bra027678.1-P Field mustard cytosol, endoplasmic reticulum, nucleus 35.56 25.5
Os01t0736900-01 Rice plasma membrane 35.56 25.3
Bra027757.1-P Field mustard cytosol, endoplasmic reticulum, peroxisome 35.0 25.2
CDY08353 Canola cytosol, endoplasmic reticulum, nucleus 35.0 25.2
Zm00001d038768_P001 Maize extracellular, mitochondrion 35.56 25.2
GSMUA_AchrUn_... Banana cytosol, nucleus, plasma membrane 36.11 25.19
GSMUA_Achr9P05440_001 Banana nucleus, peroxisome, plasma membrane 35.0 25.1
GSMUA_Achr8P27830_001 Banana cytosol, peroxisome, plasma membrane 35.0 25.1
EES19841 Sorghum cytosol, nucleus, plasma membrane 35.56 25.1
AT1G64090.2 Thale cress cytosol, endoplasmic reticulum, nucleus 37.78 25.09
TraesCS7B01G241100.1 Wheat cytosol, peroxisome, plasma membrane, plastid 35.56 24.62
TraesCS7A01G341800.1 Wheat cytosol, peroxisome, plasma membrane, plastid 35.56 24.62
GSMUA_Achr6P31860_001 Banana cytosol, nucleus, plasma membrane 34.44 24.6
Zm00001d012776_P001 Maize extracellular 34.44 24.51
HORVU3Hr1G069970.2 Barley cytosol, nucleus, plasma membrane 34.44 24.31
Os05t0526400-01 Rice plasma membrane 33.89 24.3
GSMUA_Achr10P... Banana cytosol, endoplasmic reticulum, plasma membrane 33.89 24.21
TraesCS3A01G278800.1 Wheat golgi 33.33 24.19
TraesCS3D01G279100.1 Wheat cytosol, nucleus, plasma membrane 33.33 24.19
TraesCS1D01G349700.1 Wheat cytosol, nucleus, plasma membrane 33.33 24.19
GSMUA_Achr4P08400_001 Banana cytosol 33.89 24.11
TraesCS3B01G313000.1 Wheat cytosol, nucleus, plasma membrane 33.89 24.11
TraesCS1B01G360800.1 Wheat cytosol, nucleus, plasma membrane 33.33 24.1
AT4G23630.2 Thale cress nucleus 36.67 24.0
Os02t0265900-01 Rice cytosol, peroxisome, plasma membrane 30.56 23.91
TraesCS7D01G337800.1 Wheat cytosol, peroxisome, plasma membrane, plastid 34.44 23.85
GSMUA_Achr3P31920_001 Banana cytosol 28.89 23.74
AT4G11220.1 Thale cress nucleus 35.56 23.62
CDX90792 Canola cytosol, peroxisome, plasma membrane 35.0 23.6
Zm00001d016041_P001 Maize extracellular 30.0 23.48
AT5G41600.1 Thale cress cytosol, nucleus, plasma membrane 33.33 23.35
CDY10954 Canola cytosol 35.0 23.33
OQU84758 Sorghum cytosol, peroxisome, plasma membrane 30.0 23.28
Bra000739.1-P Field mustard cytosol 34.44 23.22
Bra019285.1-P Field mustard cytosol 34.44 23.13
TraesCS1A01G346800.3 Wheat plasma membrane 32.22 23.02
PGSC0003DMT400032086 Potato cytosol, nucleus, plasma membrane 34.44 22.96
Solyc08g081730.2.1 Tomato endoplasmic reticulum, plastid 34.44 22.96
CDY57657 Canola cytosol, nucleus, plasma membrane 35.0 22.91
CDY44123 Canola cytosol, nucleus, plasma membrane 35.0 22.83
Bra013717.1-P Field mustard nucleus 35.0 22.83
Bra010539.1-P Field mustard cytosol 33.89 22.68
EER89811 Sorghum peroxisome 32.22 22.66
CDY24806 Canola cytosol 34.44 22.63
HORVU1Hr1G082010.3 Barley cytosol, nucleus, plasma membrane, plastid 32.78 22.61
CDY41666 Canola cytosol 34.44 22.46
Os06t0503400-01 Rice plasma membrane 32.78 22.26
VIT_16s0050g01790.t01 Wine grape cytosol, nucleus, plasma membrane 31.11 22.05
Zm00001d037453_P001 Maize cytosol, peroxisome, plasma membrane 31.11 21.46
HORVU7Hr1G075700.2 Barley mitochondrion 35.0 21.0
HORVU7Hr1G081290.4 Barley plastid 26.67 20.78
TraesCS3B01G178100.1 Wheat cytosol, nucleus, plasma membrane 32.78 20.63
TraesCS3D01G159100.1 Wheat cytosol, nucleus, plasma membrane 32.78 20.63
Zm00001d008982_P001 Maize cytosol, nucleus, plasma membrane 31.67 20.43
GSMUA_Achr5P06850_001 Banana cytosol, nucleus, plasma membrane 28.33 20.4
CDY05135 Canola mitochondrion 34.44 19.81
KXG31516 Sorghum cytosol, nucleus, plasma membrane 30.56 19.37
GSMUA_Achr3P15760_001 Banana cytosol 16.11 19.33
VIT_03s0180g00170.t01 Wine grape endoplasmic reticulum, plasma membrane, vacuole 21.67 18.84
HORVU3Hr1G030760.2 Barley mitochondrion 32.78 18.79
TraesCS3A01G151200.1 Wheat cytosol, peroxisome, plasma membrane 32.78 18.32
Zm00001d039316_P001 Maize cytosol, nucleus, plasma membrane 30.56 17.97
VIT_17s0000g03260.t01 Wine grape plasma membrane 20.0 16.98
VIT_08s0007g01720.t01 Wine grape plasma membrane 17.78 15.31
CDY13240 Canola cytosol, peroxisome, plasma membrane 13.33 14.91
VIT_12s0028g01090.t01 Wine grape cytosol, peroxisome, plasma membrane 17.22 12.5
VIT_00s0253g00030.t01 Wine grape endoplasmic reticulum, plasma membrane, vacuole 12.78 10.75
VIT_01s0011g04030.t01 Wine grape cytosol 16.67 8.02
CDX86802 Canola cytosol, nucleus, peroxisome 10.0 7.35
VIT_13s0067g02960.t01 Wine grape endoplasmic reticulum, peroxisome, plasma membrane 13.33 7.34
VIT_02s0025g00590.t01 Wine grape mitochondrion 2.22 6.67
Bra035242.1-P Field mustard cytosol 7.22 6.5
CDY62522 Canola cytosol 2.78 6.25
Protein Annotations
MapMan:13.7.2.1ProteinID:CBI21625ProteinID:CBI21625.3UniProt:D7SWH6EMBL:FN595233GO:GO:0005575
GO:GO:0016020GO:GO:0016021InterPro:IPR003388PFAM:PF02453PFscan:PS50845PANTHER:PTHR10994
PANTHER:PTHR10994:SF70InterPro:ReticulonSUPFAM:SSF57850TMHMM:TMhelixUniParc:UPI0001BE20CCArrayExpress:VIT_07s0031g02730
EnsemblPlantsGene:VIT_07s0031g02730EnsemblPlants:VIT_07s0031g02730.t01::::
Description
Reticulon-like protein [Source:UniProtKB/TrEMBL;Acc:D7SWH6]
Coordinates
chr7:+:19192304..19193055
Molecular Weight (calculated)
21008.9 Da
IEP (calculated)
10.091
GRAVY (calculated)
0.212
Length
180 amino acids
Sequence
(BLAST)
001: MLRKRCGKVI RERDNGGNIF WVLSDCRHYF RLYCVNAWLK LNASCHVSHI FILSLAILFF WSHTPTFINK SPPHIPEVHI LGDPFPRAVN ALTIEINRSF
101: SMLREIASGR DLKKSLIIIA GLWVLSMDER WNEGPKHHQP ISILPIFSCS HLTQNFFFAI FLRLNCVHFS FMRVLPTFPF
Best Arabidopsis Sequence Match ( AT4G23630.1 )
(BLAST)
001: MAEEHKHDES VIAPEPAVEV VERESLMDKI SEKIHHGGDS SSSSSSSDDE DEKKKTKKPS SPSSSMKSKV YRLFGREQPV HKVLGGGKPA DIFMWKNKKM
101: SGGVLGGATA AWVVFELMEY HLLTLLCHVM IVVLAVLFLW SNATMFINKS PPKIPEVHIP EEPILQLASG LRIEINRGFS SLREIASGRD LKKFLIAIAG
201: LWVLSILGGC FNFLTLAYIA LVLLFTVPLA YDKYEDKVDP LGEKAMIELK KQYAVLDEKV LSKIPLGPLK NKKKD
Arabidopsis Description
RTNLB1Reticulon-like protein [Source:UniProtKB/TrEMBL;Acc:A0A178V247]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.