Skip to main content
crop-pal logo
Maize
Search for another protein from :
Maize
Subcellular Localization
min:
: max

 
Winner_takes_all: peroxisome, cytosol, plasma membrane

Predictor Summary:
  • cytosol 1
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • plasma membrane 2
  • golgi 1
  • peroxisome 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, peroxisome, plasma membrane
Any Predictor:cytosol, peroxisome, secretory
MultiLoc:cytosol
PProwler:secretory
WoLF PSORT:plasma membrane
YLoc:peroxisome
PPI

Inferred distinct locusB in Crop

locusBlocations
Zm00001d004543_P001
Zm00001d007067_P003
Zm00001d008982_P001
Zm00001d010538_P005
Zm00001d010824_P001
Zm00001d012017_P002
Zm00001d012393_P004
Zm00001d012776_P001
Zm00001d013600_P001
Zm00001d013839_P001
Zm00001d015005_P002
Zm00001d015006_P004
Zm00001d016041_P001
Zm00001d020229_P001
Zm00001d020624_P002
Zm00001d020729_P001
Zm00001d024925_P001
Zm00001d024933_P003
Zm00001d029226_P001
Zm00001d032442_P002
Zm00001d034638_P001
Zm00001d037453_P001
Zm00001d037747_P001
Zm00001d038380_P001
Zm00001d038768_P001
Zm00001d039182_P001
Zm00001d039316_P001
Zm00001d039455_P002
Zm00001d040209_P001
Zm00001d040435_P003
Zm00001d040734_P001
Zm00001d041267_P001
Zm00001d042329_P001
Zm00001d043551_P003
Zm00001d044089_P002
Zm00001d044412_P001
Zm00001d047446_P002
Zm00001d053686_P001
Zm00001d054017_P003

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT4G11220.1 Zm00001d010824_P001 AT1G09330.1 21798944
AT4G11220.1 Zm00001d040734_P001 AT1G09330.1 21798944
AT4G11220.1 Zm00001d012393_P004 AT3G59500.1 21798944
AT4G11220.1 Zm00001d041267_P001 AT3G59500.1 21798944
AT4G11220.1 Zm00001d053686_P001 AT3G59500.1 21798944
AT5G41600.1 Zm00001d037747_P001 AT1G55190.1 21798944
AT5G41600.1 Zm00001d039455_P002 AT1G55190.1 21798944
AT5G41600.1 Zm00001d040435_P003 AT1G77350.1 21798944
AT5G41600.1 Zm00001d015005_P002 AT2G03120.1 21798944
AT5G41600.1 Zm00001d015006_P004 AT2G03120.1 21798944
AT5G41600.1 Zm00001d054017_P003 AT2G03120.1 21798944
AT5G41600.1 Zm00001d013600_P001 AT2G39960.1 21798944
AT5G41600.1 Zm00001d020624_P002 AT2G39960.1 21798944
AT5G41600.1 Zm00001d024925_P001 AT2G46890.1 21798944
AT5G41600.1 Zm00001d039182_P001 AT3G02420.1 21798944
AT5G41600.1 Zm00001d044089_P002 AT3G02420.1 21798944
AT5G41600.1 Zm00001d044412_P001 AT3G02420.1 21798944
AT5G41600.1 Zm00001d004543_P001 AT3G07950.1 21798944
AT5G41600.1 Zm00001d007067_P003 AT3G07950.1 21798944
AT5G41600.1 Zm00001d024933_P003 AT3G07950.1 21798944
AT5G41600.1 Zm00001d029226_P001 AT3G07950.1 21798944
AT5G41600.1 Zm00001d047446_P002 AT3G07950.1 21798944
AT5G41600.1 Zm00001d012017_P002 AT3G27080.1 21798944
AT5G41600.1 Zm00001d040209_P001 AT3G27080.1 21798944
AT5G41600.1 Zm00001d042329_P001 AT3G27080.1 21798944
AT5G41600.1 Zm00001d010538_P005 AT3G46060.1 21798944
AT5G41600.1 Zm00001d034638_P001 AT3G46060.1 21798944
AT5G41600.1 Zm00001d038380_P001 AT3G46060.1 21798944
AT5G41600.1 Zm00001d012393_P004 AT3G59500.1 21798944
AT5G41600.1 Zm00001d041267_P001 AT3G59500.1 21798944
AT5G41600.1 Zm00001d053686_P001 AT3G59500.1 21798944
AT5G41600.1 Zm00001d008982_P001 AT5G41600.1 21798944
AT5G41600.1 Zm00001d012776_P001 AT5G41600.1 21798944
AT5G41600.1 Zm00001d016041_P001 AT5G41600.1 21798944
AT5G41600.1 Zm00001d020229_P001 AT5G41600.1 21798944
AT5G41600.1 Zm00001d020729_P001 AT5G41600.1 21798944
AT5G41600.1 Zm00001d037453_P001 AT5G41600.1 21798944
AT5G41600.1 Zm00001d038768_P001 AT5G41600.1 21798944
AT5G41600.1 Zm00001d039316_P001 AT5G41600.1 21798944
AT5G41600.1 Zm00001d043551_P003 AT5G41600.1 21798944
AT5G41600.1 Zm00001d013839_P001 AT5G53560.1 21798944
AT5G41600.1 Zm00001d032442_P002 AT5G53560.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
EER89811 Sorghum peroxisome 88.89 90.62
Os06t0503400-01 Rice plasma membrane 83.52 82.26
TraesCS7A01G341800.1 Wheat cytosol, peroxisome, plasma membrane, plastid 77.39 77.69
TraesCS7B01G241100.1 Wheat cytosol, peroxisome, plasma membrane, plastid 77.39 77.69
TraesCS7D01G337800.1 Wheat cytosol, peroxisome, plasma membrane, plastid 77.01 77.31
HORVU7Hr1G081290.4 Barley plastid 64.37 72.73
Zm00001d016041_P001 Maize extracellular 60.92 69.13
HORVU7Hr1G075700.2 Barley mitochondrion 78.16 68.0
KRH41254 Soybean cytosol, nucleus, plasma membrane 50.96 52.36
Solyc01g095200.2.1 Tomato plastid 52.49 52.09
PGSC0003DMT400000230 Potato cytosol, nucleus, plasma membrane 52.87 52.08
GSMUA_Achr10P... Banana cytosol, endoplasmic reticulum, plasma membrane 50.19 51.98
Solyc03g007740.2.1 Tomato nucleus 50.57 51.76
CDY13240 Canola cytosol, peroxisome, plasma membrane 31.8 51.55
Solyc06g036430.2.1 Tomato cytosol, nucleus, plasma membrane 49.81 51.38
KRH59988 Soybean mitochondrion 49.81 51.18
CDY25557 Canola cytosol, endoplasmic reticulum, nucleus 49.04 51.0
PGSC0003DMT400074360 Potato cytosol, nucleus, plasma membrane 49.43 50.99
PGSC0003DMT400051387 Potato cytosol, nucleus, plasma membrane 49.81 50.98
VIT_15s0046g01760.t01 Wine grape cytosol, peroxisome, plasma membrane 49.81 50.98
VIT_02s0025g00640.t01 Wine grape cytosol, nucleus, plasma membrane 49.04 50.79
CDY34396 Canola cytosol, endoplasmic reticulum, nucleus 48.66 50.6
PGSC0003DMT400049928 Potato cytosol, nucleus, plasma membrane 49.43 50.59
CDY38194 Canola cytosol, nucleus, plasma membrane 48.28 50.4
Bra027678.1-P Field mustard cytosol, endoplasmic reticulum, nucleus 47.89 49.8
Bra027757.1-P Field mustard cytosol, endoplasmic reticulum, peroxisome 47.51 49.6
KRG99174 Soybean endoplasmic reticulum, plasma membrane 16.48 49.43
CDY08353 Canola cytosol, endoplasmic reticulum, nucleus 47.13 49.2
Solyc10g011870.2.1 Tomato cytosol, nucleus, plasma membrane 49.43 49.05
Zm00001d043551_P003 Maize plasma membrane 48.28 49.03
Solyc08g081730.2.1 Tomato endoplasmic reticulum, plastid 50.57 48.89
Zm00001d038768_P001 Maize extracellular, mitochondrion 47.51 48.82
KRH40357 Soybean endoplasmic reticulum 47.89 48.64
PGSC0003DMT400032086 Potato cytosol, nucleus, plasma membrane 50.19 48.52
GSMUA_Achr5P06850_001 Banana cytosol, nucleus, plasma membrane 46.36 48.4
Zm00001d012776_P001 Maize extracellular 46.74 48.22
CDY52012 Canola cytosol, peroxisome, plasma membrane 46.74 48.03
CDX79993 Canola cytosol, peroxisome, plasma membrane 45.98 47.81
Bra004562.1-P Field mustard cytosol, peroxisome, plasma membrane 45.98 47.81
KRH00872 Soybean endoplasmic reticulum 47.13 47.49
KRH06560 Soybean endoplasmic reticulum 46.36 47.27
Bra003455.1-P Field mustard cytosol, peroxisome, plasma membrane 45.98 47.24
CDY53913 Canola cytosol, peroxisome, plasma membrane 45.98 47.24
CDX90792 Canola cytosol, peroxisome, plasma membrane 48.28 47.19
CDY42012 Canola cytosol, peroxisome, plasma membrane 45.21 47.01
CDY57657 Canola cytosol, nucleus, plasma membrane 49.43 46.91
Bra000739.1-P Field mustard cytosol 47.89 46.82
Zm00001d020229_P001 Maize plasma membrane 27.2 46.71
AT4G11220.1 Thale cress nucleus 48.28 46.49
Bra013717.1-P Field mustard nucleus 49.04 46.38
Zm00001d020729_P001 Maize plasma membrane 16.86 46.32
AT2G46170.1 Thale cress cytosol, nucleus, plasma membrane 45.21 46.27
Bra010539.1-P Field mustard cytosol 47.51 46.1
VIT_16s0050g01790.t01 Wine grape cytosol, nucleus, plasma membrane 44.83 46.06
AT5G41600.1 Thale cress cytosol, nucleus, plasma membrane 45.21 45.91
Bra019285.1-P Field mustard cytosol 47.13 45.9
CDY44123 Canola cytosol, nucleus, plasma membrane 48.28 45.65
CDY24806 Canola cytosol 47.89 45.62
CDY10954 Canola cytosol 47.13 45.56
AT3G61560.1 Thale cress cytosol, nucleus, plasma membrane 44.06 45.45
AT1G64090.2 Thale cress cytosol, endoplasmic reticulum, nucleus 47.13 45.39
AT4G23630.2 Thale cress nucleus 47.51 45.09
CDY41666 Canola cytosol 47.51 44.93
Zm00001d008982_P001 Maize cytosol, nucleus, plasma membrane 47.89 44.8
KRH35223 Soybean cytosol, nucleus, plasma membrane 42.15 44.0
Zm00001d039316_P001 Maize cytosol, nucleus, plasma membrane 49.43 42.16
KRH48008 Soybean cytosol, peroxisome, plasma membrane 48.66 40.45
Zm00001d037848_P008 Maize endoplasmic reticulum, nucleus, peroxisome 38.31 39.68
CDY05135 Canola mitochondrion 47.13 39.3
Zm00001d026575_P001 Maize mitochondrion, peroxisome, plasma membrane, plastid, vacuole 27.59 36.36
Zm00001d011631_P001 Maize golgi, peroxisome, plasma membrane 30.65 36.2
Zm00001d001901_P002 Maize plasma membrane 27.2 35.86
Zm00001d038910_P001 Maize plasma membrane 31.03 35.68
Zm00001d034313_P001 Maize cytosol, nucleus, plasma membrane 33.72 35.48
Bra037369.1-P Field mustard cytosol 32.95 35.39
Zm00001d018781_P001 Maize extracellular, mitochondrion 32.95 35.39
CDY48510 Canola cytosol 32.95 35.39
CDY07184 Canola cytosol, peroxisome, plasma membrane 32.95 35.39
CDY62522 Canola cytosol 10.73 35.0
VIT_02s0025g00590.t01 Wine grape mitochondrion 8.05 35.0
Bra035242.1-P Field mustard cytosol 26.44 34.5
AT4G01230.2 Thale cress cytosol 32.18 34.43
Zm00001d047517_P001 Maize peroxisome 29.5 33.77
CDX86802 Canola cytosol, nucleus, peroxisome 30.65 32.65
KRG91601 Soybean mitochondrion 42.15 32.35
Zm00001d008590_P001 Maize plastid 16.09 31.58
VIT_07s0031g02730.t01 Wine grape golgi, mitochondrion, nucleus, plasma membrane 21.46 31.11
CDX89122 Canola extracellular, mitochondrion 18.01 30.72
Zm00001d042846_P001 Maize plasma membrane 24.14 30.0
Zm00001d039213_P001 Maize golgi, plasma membrane, plastid 22.22 24.79
Protein Annotations
EnsemblPlants:Zm00001d037453_P001EnsemblPlants:Zm00001d037453_T001EnsemblPlantsGene:Zm00001d037453GO:GO:0005575GO:GO:0005622GO:GO:0005623
GO:GO:0005737GO:GO:0005783GO:GO:0005789GO:GO:0016020GO:GO:0016021InterPro:IPR003388
InterPro:ReticulonPANTHER:PTHR10994PANTHER:PTHR10994:SF73PFAM:PF02453PFscan:PS50845ProteinID:AQK84022.1
SEG:segTMHMM:TMhelixUniParc:UPI000843413DUniProt:A0A1D6LXY8MapMan:13.7.2.1:
Description
Reticulon
Coordinates
chr6:+:125870108..125872775
Molecular Weight (calculated)
28155.4 Da
IEP (calculated)
9.553
GRAVY (calculated)
0.169
Length
261 amino acids
Sequence
(BLAST)
001: MADPAEENVV SPPPTPAAPA VGASDSPLQP VADGASTEKV SAPAPEVRSR GFRLLGEDTS VHKSLGGGKR ELSAAADVLL WKDKKTSAVV IGGATVIWVL
101: FEVLDYHLLT LISHVLIGVL ATLFLWSKAT TFIKKSPPDI PVVQVSEDLV VNVSRALRND INRALHLFRE IAMGHDLKKF LGVIVGLWVL SGVGSSCDFL
201: TLTYIAVLML HTVPILYDKY QDKVDHVAGR AHTEALKQYK VLDAKVLSKI PRGAVKSKKQ N
Best Arabidopsis Sequence Match ( AT1G64090.2 )
(BLAST)
001: MAEEHKHEES IMEKISEKIH GHDDSSSSSS DSDDDKNSAS LKTKIYRLFG REQPLHKLFG GGKHSENQDI NERFGLVFAA ADIFLWRNKK VSGGVLGAAT
101: VSWILFELLE YNLLTLFGHI SILALAVLFL WSSASTFIHK SPLHIPEVHI PEDVVLQLAS GLRIEINRGF TVLRDIASGR DLKKFLLVIA GLWVLSKVGS
201: SCNFLTLIYI ATVLLFTIPV LYEKYEDKVD DFGEKAMREI KKQYVEFDVK VLSKVMSKIP KGAFAFIKKK D
Arabidopsis Description
RTNLB3Reticulon-like protein [Source:UniProtKB/TrEMBL;Acc:F4I596]
SUBAcon: [endoplasmic reticulum,nucleus,cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.