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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol, endoplasmic reticulum, peroxisome

Predictor Summary:
  • nucleus 1
  • cytosol 1
  • plasma membrane 2
  • extracellular 1
  • golgi 1
  • endoplasmic reticulum 2
  • vacuole 1
  • peroxisome 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, endoplasmic reticulum, peroxisome
Any Predictor:cytosol, nucleus, peroxisome, secretory
BaCelLo:nucleus
MultiLoc:cytosol
Plant-mPloc:plasma membrane
PProwler:secretory
WoLF PSORT:endoplasmic reticulum
YLoc:peroxisome
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY38194 Canola cytosol, nucleus, plasma membrane 99.2 99.2
Bra027678.1-P Field mustard cytosol, endoplasmic reticulum, nucleus 96.8 96.41
AT1G64090.2 Thale cress cytosol, endoplasmic reticulum, nucleus 86.0 79.34
VIT_02s0025g00640.t01 Wine grape cytosol, nucleus, plasma membrane 70.4 69.84
KRH41254 Soybean cytosol, nucleus, plasma membrane 66.8 65.75
KRH59988 Soybean mitochondrion 66.8 65.75
VIT_15s0046g01760.t01 Wine grape cytosol, peroxisome, plasma membrane 64.8 63.53
Bra004562.1-P Field mustard cytosol, peroxisome, plasma membrane 63.6 63.35
TraesCS3D01G279100.1 Wheat cytosol, nucleus, plasma membrane 62.8 63.31
TraesCS3A01G278800.1 Wheat golgi 62.8 63.31
TraesCS3B01G313000.1 Wheat cytosol, nucleus, plasma membrane 63.6 62.85
Os01t0736900-01 Rice plasma membrane 63.6 62.85
Bra000739.1-P Field mustard cytosol 66.8 62.55
Bra010539.1-P Field mustard cytosol 67.2 62.45
HORVU3Hr1G069970.2 Barley cytosol, nucleus, plasma membrane 63.6 62.35
GSMUA_Achr8P27830_001 Banana cytosol, peroxisome, plasma membrane 62.4 62.15
TraesCS1D01G349700.1 Wheat cytosol, nucleus, plasma membrane 61.6 62.1
KXG33320 Sorghum cytosol, nucleus, plasma membrane 64.0 62.02
Bra013717.1-P Field mustard nucleus 68.4 61.96
Bra019285.1-P Field mustard cytosol 66.4 61.94
Zm00001d043551_P003 Maize plasma membrane 63.6 61.87
TraesCS1B01G360800.1 Wheat cytosol, nucleus, plasma membrane 61.6 61.85
Os05t0526400-01 Rice plasma membrane 61.6 61.35
Zm00001d012776_P001 Maize extracellular 62.0 61.26
GSMUA_Achr6P31860_001 Banana cytosol, nucleus, plasma membrane 61.6 61.11
GSMUA_Achr9P05440_001 Banana nucleus, peroxisome, plasma membrane 61.2 60.96
Os01t0226300-01 Rice plasma membrane 43.2 60.67
EES19841 Sorghum cytosol, nucleus, plasma membrane 61.6 60.39
GSMUA_AchrUn_... Banana cytosol, nucleus, plasma membrane 62.0 60.08
Zm00001d038768_P001 Maize extracellular, mitochondrion 60.4 59.45
GSMUA_Achr10P... Banana cytosol, endoplasmic reticulum, plasma membrane 59.6 59.13
Bra003455.1-P Field mustard cytosol, peroxisome, plasma membrane 60.0 59.06
GSMUA_Achr3P31920_001 Banana cytosol 51.6 58.9
Solyc08g081730.2.1 Tomato endoplasmic reticulum, plastid 63.6 58.89
PGSC0003DMT400032086 Potato cytosol, nucleus, plasma membrane 63.6 58.89
GSMUA_Achr4P08400_001 Banana cytosol 58.8 58.1
Zm00001d008982_P001 Maize cytosol, nucleus, plasma membrane 61.6 55.2
Zm00001d020729_P001 Maize plasma membrane 20.8 54.74
KXG31516 Sorghum cytosol, nucleus, plasma membrane 62.0 54.58
TraesCS3B01G178100.1 Wheat cytosol, nucleus, plasma membrane 62.0 54.2
GSMUA_Achr5P06850_001 Banana cytosol, nucleus, plasma membrane 54.0 54.0
Zm00001d020229_P001 Maize plasma membrane 32.8 53.95
TraesCS3D01G159100.1 Wheat cytosol, nucleus, plasma membrane 61.6 53.85
TraesCS1A01G346800.3 Wheat plasma membrane 51.6 51.19
Zm00001d039316_P001 Maize cytosol, nucleus, plasma membrane 62.4 50.98
Os02t0265900-01 Rice cytosol, peroxisome, plasma membrane 46.0 50.0
HORVU1Hr1G082010.3 Barley cytosol, nucleus, plasma membrane, plastid 51.2 49.04
HORVU3Hr1G030760.2 Barley mitochondrion 60.8 48.41
Zm00001d016041_P001 Maize extracellular 44.4 48.26
EER89811 Sorghum peroxisome 49.2 48.05
TraesCS3A01G151200.1 Wheat cytosol, peroxisome, plasma membrane 61.6 47.83
TraesCS7B01G241100.1 Wheat cytosol, peroxisome, plasma membrane, plastid 49.6 47.69
TraesCS7A01G341800.1 Wheat cytosol, peroxisome, plasma membrane, plastid 49.6 47.69
Zm00001d037453_P001 Maize cytosol, peroxisome, plasma membrane 49.6 47.51
TraesCS7D01G337800.1 Wheat cytosol, peroxisome, plasma membrane, plastid 49.2 47.31
Os06t0503400-01 Rice plasma membrane 50.0 47.17
OQU84758 Sorghum cytosol, peroxisome, plasma membrane 43.6 46.98
Bra037369.1-P Field mustard cytosol 44.0 45.27
HORVU7Hr1G075700.2 Barley mitochondrion 49.2 41.0
HORVU7Hr1G081290.4 Barley plastid 37.6 40.69
Bra035242.1-P Field mustard cytosol 31.2 39.0
GSMUA_Achr3P15760_001 Banana cytosol 22.0 36.67
Bra037594.1-P Field mustard plasma membrane 32.0 35.71
Bra029827.1-P Field mustard plasma membrane 34.0 35.56
VIT_07s0031g02730.t01 Wine grape golgi, mitochondrion, nucleus, plasma membrane 25.2 35.0
Bra003171.1-P Field mustard plasma membrane 27.2 33.5
Bra001748.1-P Field mustard plastid 25.6 32.65
Bra040612.1-P Field mustard plasma membrane 23.6 32.24
Bra004291.1-P Field mustard plasma membrane 26.8 31.75
Bra029878.1-P Field mustard cytosol, peroxisome, plasma membrane 30.0 31.38
Bra007047.1-P Field mustard golgi, plasma membrane, vacuole 25.6 31.22
Bra034153.1-P Field mustard plasma membrane 27.6 30.94
Bra022426.1-P Field mustard cytosol, plasma membrane, plastid 28.8 29.51
Bra039207.1-P Field mustard plasma membrane 19.2 23.08
Bra033951.1-P Field mustard plasma membrane 26.4 21.85
Protein Annotations
MapMan:13.7.2.1EnsemblPlantsGene:Bra027757EnsemblPlants:Bra027757.1EnsemblPlants:Bra027757.1-PGO:GO:0005575GO:GO:0005622
GO:GO:0005623GO:GO:0005737GO:GO:0005783GO:GO:0005789GO:GO:0016020GO:GO:0016021
InterPro:IPR003388UniProt:M4EG44PFAM:PF02453PFscan:PS50845PANTHER:PTHR10994PANTHER:PTHR10994:SF70
InterPro:ReticulonTMHMM:TMhelixUniParc:UPI000254221FSEG:seg::
Description
AT1G64090 (E=2e-096) | reticulon family protein (RTNLB3)
Coordinates
chrA09:+:6445014..6446338
Molecular Weight (calculated)
28127.6 Da
IEP (calculated)
10.000
GRAVY (calculated)
0.002
Length
250 amino acids
Sequence
(BLAST)
001: MAEEHKHEES IMEKIAEKIH GHDGSSSSDS DDEKKASSIK TKIFRLFGRE KPVHKVFGGG KPADIFLWRN KKVSGGVLGA ATLSWILFEL LQYNLLTLFG
101: HVSILALAVL FSWPSATTFI HKKPPHIPEV HIPEEVVLQL ASGLRIEINR GFTILRNIAL GRDLKKFLMV VAGLWVLSKV GSSCNFLTLI YIATVLLFTI
201: PVLYEKYEDK VDHFGEKAMK EIKKQYAVLD EKVLSKVMSK IPRGAFNKKD
Best Arabidopsis Sequence Match ( AT1G64090.1 )
(BLAST)
001: MAEEHKHEES IMEKISEKIH GHDDSSSSSS DSDDDKNSAS LKTKIYRLFG REQPLHKLFG GGKPADIFLW RNKKVSGGVL GAATVSWILF ELLEYNLLTL
101: FGHISILALA VLFLWSSAST FIHKSPLHIP EVHIPEDVVL QLASGLRIEI NRGFTVLRDI ASGRDLKKFL LVIAGLWVLS KVGSSCNFLT LIYIATVLLF
201: TIPVLYEKYE DKVDDFGEKA MREIKKQYVE FDVKVLSKVM SKIPKGAFAF IKKKD
Arabidopsis Description
RTNLB3Reticulon-like protein [Source:UniProtKB/TrEMBL;Acc:F4I596]
SUBAcon: [cytosol,nucleus,endoplasmic reticulum]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.