Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 2
- golgi 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3A01G278800.1 | Wheat | golgi | 97.98 | 97.98 |
| TraesCS3B01G313000.1 | Wheat | cytosol, nucleus, plasma membrane | 97.18 | 95.26 |
| HORVU3Hr1G069970.2 | Barley | cytosol, nucleus, plasma membrane | 96.37 | 93.73 |
| Os01t0736900-01 | Rice | plasma membrane | 83.06 | 81.42 |
| Zm00001d043551_P003 | Maize | plasma membrane | 83.87 | 80.93 |
| Zm00001d012776_P001 | Maize | extracellular | 82.26 | 80.63 |
| KXG33320 | Sorghum | cytosol, nucleus, plasma membrane | 82.66 | 79.46 |
| TraesCS1D01G349700.1 | Wheat | cytosol, nucleus, plasma membrane | 75.0 | 75.0 |
| CDY25557 | Canola | cytosol, endoplasmic reticulum, nucleus | 65.73 | 64.94 |
| CDY08353 | Canola | cytosol, endoplasmic reticulum, nucleus | 64.92 | 64.4 |
| VIT_15s0046g01760.t01 | Wine grape | cytosol, peroxisome, plasma membrane | 66.13 | 64.31 |
| VIT_02s0025g00640.t01 | Wine grape | cytosol, nucleus, plasma membrane | 65.32 | 64.29 |
| CDY34396 | Canola | cytosol, endoplasmic reticulum, nucleus | 64.52 | 63.74 |
| CDY38194 | Canola | cytosol, nucleus, plasma membrane | 64.11 | 63.6 |
| Bra027678.1-P | Field mustard | cytosol, endoplasmic reticulum, nucleus | 64.11 | 63.35 |
| Bra027757.1-P | Field mustard | cytosol, endoplasmic reticulum, peroxisome | 63.31 | 62.8 |
| KRH41254 | Soybean | cytosol, nucleus, plasma membrane | 62.9 | 61.42 |
| KRH59988 | Soybean | mitochondrion | 62.9 | 61.42 |
| PGSC0003DMT400074360 | Potato | cytosol, nucleus, plasma membrane | 62.5 | 61.26 |
| Solyc10g011870.2.1 | Tomato | cytosol, nucleus, plasma membrane | 64.52 | 60.84 |
| PGSC0003DMT400049928 | Potato | cytosol, nucleus, plasma membrane | 62.5 | 60.78 |
| PGSC0003DMT400000230 | Potato | cytosol, nucleus, plasma membrane | 64.92 | 60.75 |
| AT5G41600.1 | Thale cress | cytosol, nucleus, plasma membrane | 62.9 | 60.7 |
| CDX79993 | Canola | cytosol, peroxisome, plasma membrane | 61.29 | 60.56 |
| Bra004562.1-P | Field mustard | cytosol, peroxisome, plasma membrane | 61.29 | 60.56 |
| Solyc06g036430.2.1 | Tomato | cytosol, nucleus, plasma membrane | 61.69 | 60.47 |
| Solyc03g007740.2.1 | Tomato | nucleus | 62.1 | 60.39 |
| PGSC0003DMT400051387 | Potato | cytosol, nucleus, plasma membrane | 62.1 | 60.39 |
| PGSC0003DMT400032086 | Potato | cytosol, nucleus, plasma membrane | 65.73 | 60.37 |
| Solyc01g095200.2.1 | Tomato | plastid | 63.71 | 60.08 |
| Solyc08g081730.2.1 | Tomato | endoplasmic reticulum, plastid | 65.32 | 60.0 |
| AT4G23630.2 | Thale cress | nucleus | 66.53 | 60.0 |
| CDY41666 | Canola | cytosol | 66.53 | 59.78 |
| AT1G64090.2 | Thale cress | cytosol, endoplasmic reticulum, nucleus | 65.32 | 59.78 |
| CDY42012 | Canola | cytosol, peroxisome, plasma membrane | 60.48 | 59.76 |
| CDY52012 | Canola | cytosol, peroxisome, plasma membrane | 60.89 | 59.45 |
| CDY44123 | Canola | cytosol, nucleus, plasma membrane | 66.13 | 59.42 |
| KRH06560 | Soybean | endoplasmic reticulum | 61.29 | 59.38 |
| CDY10954 | Canola | cytosol | 64.52 | 59.26 |
| KRH40357 | Soybean | endoplasmic reticulum | 61.29 | 59.14 |
| KRH00872 | Soybean | endoplasmic reticulum | 61.69 | 59.07 |
| Bra013717.1-P | Field mustard | nucleus | 65.73 | 59.06 |
| Bra019285.1-P | Field mustard | cytosol | 63.71 | 58.96 |
| CDY24806 | Canola | cytosol | 64.92 | 58.76 |
| KRG99174 | Soybean | endoplasmic reticulum, plasma membrane | 20.56 | 58.62 |
| CDY57657 | Canola | cytosol, nucleus, plasma membrane | 64.92 | 58.55 |
| Bra010539.1-P | Field mustard | cytosol | 63.31 | 58.36 |
| CDY53913 | Canola | cytosol, peroxisome, plasma membrane | 59.68 | 58.27 |
| Bra003455.1-P | Field mustard | cytosol, peroxisome, plasma membrane | 59.68 | 58.27 |
| AT3G61560.1 | Thale cress | cytosol, nucleus, plasma membrane | 59.27 | 58.1 |
| Bra000739.1-P | Field mustard | cytosol | 62.5 | 58.05 |
| AT2G46170.1 | Thale cress | cytosol, nucleus, plasma membrane | 59.68 | 58.04 |
| CDX90792 | Canola | cytosol, peroxisome, plasma membrane | 62.1 | 57.68 |
| TraesCS3D01G159100.1 | Wheat | cytosol, nucleus, plasma membrane | 65.73 | 56.99 |
| VIT_16s0050g01790.t01 | Wine grape | cytosol, nucleus, plasma membrane | 57.66 | 56.3 |
| KRH35223 | Soybean | cytosol, nucleus, plasma membrane | 55.65 | 55.2 |
| VIT_02s0025g00590.t01 | Wine grape | mitochondrion | 13.31 | 55.0 |
| AT4G11220.1 | Thale cress | nucleus | 60.08 | 54.98 |
| CDY13240 | Canola | cytosol, peroxisome, plasma membrane | 34.27 | 52.8 |
| KRH48008 | Soybean | cytosol, peroxisome, plasma membrane | 63.71 | 50.32 |
| CDY62522 | Canola | cytosol | 16.13 | 50.0 |
| CDY05135 | Canola | mitochondrion | 62.9 | 49.84 |
| AT4G01230.2 | Thale cress | cytosol | 47.18 | 47.95 |
| TraesCS1D01G083100.2 | Wheat | mitochondrion | 54.03 | 46.37 |
| Bra037369.1-P | Field mustard | cytosol | 44.76 | 45.68 |
| CDY07184 | Canola | cytosol, peroxisome, plasma membrane | 44.76 | 45.68 |
| CDY48510 | Canola | cytosol | 44.76 | 45.68 |
| TraesCS7D01G337800.1 | Wheat | cytosol, peroxisome, plasma membrane, plastid | 47.58 | 45.38 |
| KRG91601 | Soybean | mitochondrion | 54.44 | 39.71 |
| TraesCS1D01G380400.1 | Wheat | cytosol, peroxisome, plasma membrane | 37.1 | 39.32 |
| Bra035242.1-P | Field mustard | cytosol | 31.45 | 39.0 |
| TraesCS5D01G426200.1 | Wheat | cytosol, peroxisome, plasma membrane | 40.32 | 38.61 |
| TraesCS2D01G254800.1 | Wheat | cytosol, peroxisome, vacuole | 37.9 | 38.06 |
| CDX86802 | Canola | cytosol, nucleus, peroxisome | 36.29 | 36.73 |
| TraesCS3D01G050800.1 | Wheat | mitochondrion | 32.66 | 34.62 |
| VIT_07s0031g02730.t01 | Wine grape | golgi, mitochondrion, nucleus, plasma membrane | 24.19 | 33.33 |
| TraesCS4D01G171300.2 | Wheat | peroxisome | 29.44 | 32.16 |
| CDX89122 | Canola | extracellular, mitochondrion | 18.95 | 30.72 |
| TraesCS2D01G545200.1 | Wheat | plasma membrane | 23.39 | 29.29 |
Protein Annotations
| EnsemblPlants:TraesCS3D01G279100.1 | EnsemblPlantsGene:TraesCS3D01G279100 | InterPro:IPR003388 | InterPro:Reticulon | PANTHER:PTHR10994 | PANTHER:PTHR10994:SF99 |
| PFAM:PF02453 | PFscan:PS50845 | SEG:seg | TMHMM:TMhelix | MapMan:13.7.2.1 | : |
Description
No Description!
Coordinates
chr3D:-:386726336..386727854
Molecular Weight (calculated)
27690.0 Da
IEP (calculated)
8.577
GRAVY (calculated)
0.058
Length
248 amino acids
Sequence
(BLAST)
(BLAST)
001: MAEHKEEPVA ESMMDKISDK FHGGDSSSSS SDSDDDKKGP AAGVKAKIYR LFGREKPVHA VLGGGKPADL VLWRNKKVSG GVLAGATAIW LLFEVMEYHL
101: LTLVGHCLIL SLATLFLYSN VCIFIHKSPP NIPEVKIPED MTVNIALSLR HEINRGFFTL REIGHGRDLK KFLIVTGGLW LLSVLGSCCN FLTLSYIVFV
201: VLYTVPVLYE KYDDKVDAFG EKAMIELKKY YAIFEEKVLS KIPKNKKH
101: LTLVGHCLIL SLATLFLYSN VCIFIHKSPP NIPEVKIPED MTVNIALSLR HEINRGFFTL REIGHGRDLK KFLIVTGGLW LLSVLGSCCN FLTLSYIVFV
201: VLYTVPVLYE KYDDKVDAFG EKAMIELKKY YAIFEEKVLS KIPKNKKH
001: MAEEHKHEES IMEKISEKIH GHDDSSSSSS DSDDDKNSAS LKTKIYRLFG REQPLHKLFG GGKPADIFLW RNKKVSGGVL GAATVSWILF ELLEYNLLTL
101: FGHISILALA VLFLWSSAST FIHKSPLHIP EVHIPEDVVL QLASGLRIEI NRGFTVLRDI ASGRDLKKFL LVIAGLWVLS KVGSSCNFLT LIYIATVLLF
201: TIPVLYEKYE DKVDDFGEKA MREIKKQYVE FDVKVLSKVM SKIPKGAFAF IKKKD
101: FGHISILALA VLFLWSSAST FIHKSPLHIP EVHIPEDVVL QLASGLRIEI NRGFTVLRDI ASGRDLKKFL LVIAGLWVLS KVGSSCNFLT LIYIATVLLF
201: TIPVLYEKYE DKVDDFGEKA MREIKKQYVE FDVKVLSKVM SKIPKGAFAF IKKKD
Arabidopsis Description
RTNLB3Reticulon-like protein [Source:UniProtKB/TrEMBL;Acc:F4I596]
SUBAcon: [endoplasmic reticulum,nucleus,cytosol]
SUBAcon: [endoplasmic reticulum,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.