Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- golgi 2
- extracellular 1
- plasma membrane 3
- endoplasmic reticulum 1
- vacuole 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2B01G574200.2 | Wheat | plasma membrane | 95.45 | 94.97 |
| TraesCS2A01G544000.1 | Wheat | plasma membrane | 93.43 | 92.96 |
| Os04t0670000-01 | Rice | plasma membrane | 78.79 | 78.39 |
| Zm00001d026575_P001 | Maize | mitochondrion, peroxisome, plasma membrane, plastid, vacuole | 76.77 | 76.77 |
| EES11624 | Sorghum | plasma membrane | 75.76 | 75.76 |
| Zm00001d001901_P002 | Maize | plasma membrane | 74.75 | 74.75 |
| HORVU2Hr1G122310.2 | Barley | cytosol, plasma membrane | 62.63 | 66.67 |
| GSMUA_Achr7P05440_001 | Banana | peroxisome, plasma membrane, vacuole | 59.6 | 52.91 |
| VIT_03s0180g00170.t01 | Wine grape | endoplasmic reticulum, plasma membrane, vacuole | 50.51 | 48.31 |
| CDX82294 | Canola | plastid | 45.96 | 46.43 |
| Bra001748.1-P | Field mustard | plastid | 45.96 | 46.43 |
| CDX99221 | Canola | plasma membrane | 47.47 | 46.31 |
| CDY46172 | Canola | plastid | 46.97 | 46.04 |
| KRH35738 | Soybean | endoplasmic reticulum | 46.97 | 45.59 |
| PGSC0003DMT400066222 | Potato | plasma membrane | 46.46 | 45.1 |
| KRG91024 | Soybean | plasma membrane | 45.96 | 44.61 |
| CDY22971 | Canola | plasma membrane | 43.94 | 44.39 |
| CDY22970 | Canola | plasma membrane | 43.43 | 43.88 |
| Solyc01g107620.2.1 | Tomato | plasma membrane | 46.46 | 42.01 |
| GSMUA_Achr4P20190_001 | Banana | cytosol, plastid | 58.08 | 40.78 |
| AT2G15280.1 | Thale cress | plasma membrane | 40.91 | 40.3 |
| AT3G19460.3 | Thale cress | plasma membrane | 47.47 | 40.17 |
| Bra022426.1-P | Field mustard | cytosol, plasma membrane, plastid | 46.97 | 38.11 |
| CDX71213 | Canola | plasma membrane | 36.36 | 35.47 |
| CDY48222 | Canola | cytosol, endoplasmic reticulum, plasma membrane | 35.35 | 34.48 |
| Bra040612.1-P | Field mustard | plasma membrane | 31.82 | 34.43 |
| TraesCS1D01G380400.1 | Wheat | cytosol, peroxisome, plasma membrane | 37.88 | 32.05 |
| TraesCS4D01G171300.2 | Wheat | peroxisome | 34.85 | 30.4 |
| TraesCS2D01G254800.1 | Wheat | cytosol, peroxisome, vacuole | 32.32 | 25.91 |
| TraesCS7D01G337800.1 | Wheat | cytosol, peroxisome, plasma membrane, plastid | 33.33 | 25.38 |
| TraesCS1D01G349700.1 | Wheat | cytosol, nucleus, plasma membrane | 31.31 | 25.0 |
| TraesCS3D01G279100.1 | Wheat | cytosol, nucleus, plasma membrane | 29.29 | 23.39 |
| TraesCS3D01G050800.1 | Wheat | mitochondrion | 27.27 | 23.08 |
| TraesCS5D01G426200.1 | Wheat | cytosol, peroxisome, plasma membrane | 29.8 | 22.78 |
| TraesCS3D01G159100.1 | Wheat | cytosol, nucleus, plasma membrane | 32.32 | 22.38 |
| TraesCS1D01G083100.2 | Wheat | mitochondrion | 29.8 | 20.42 |
Protein Annotations
| EnsemblPlants:TraesCS2D01G545200.1 | EnsemblPlantsGene:TraesCS2D01G545200 | InterPro:IPR003388 | InterPro:Reticulon | PANTHER:PTHR10994 | PANTHER:PTHR10994:SF65 |
| PFAM:PF02453 | PFscan:PS50845 | SEG:seg | TMHMM:TMhelix | MapMan:13.7.2.1 | : |
Description
No Description!
Coordinates
chr2D:-:621952245..621954044
Molecular Weight (calculated)
21781.2 Da
IEP (calculated)
10.618
GRAVY (calculated)
0.646
Length
198 amino acids
Sequence
(BLAST)
(BLAST)
001: MATHHRPLHA LLGGGAVADL LLWRRRNASA AAVAGASVVW FLFERAGYSL ASVLSNALLL LVVILFFWAK SASLLNRPLP PVPNLEVSDV VVEKAVVRAL
101: VWVNKVLAVA HDIAIKRDRT VFIQVIMALW VVSCIGMLFN FFTLIYIGVL LALLVPPVYE RHQDVIDEKV GLVHSILSRH LNTAISKTGQ PPKQKKAE
101: VWVNKVLAVA HDIAIKRDRT VFIQVIMALW VVSCIGMLFN FFTLIYIGVL LALLVPPVYE RHQDVIDEKV GLVHSILSRH LNTAISKTGQ PPKQKKAE
001: MGDSVSSSSR VSVHQSLGAG SVADLLLWRN RTGAVILLIS STGFWFLFER AGYNLLSFVS NVLLLLVAIF FLWAKSATVL NRPLPPVPNM EIPEEFANKA
101: ADDLRVWINY VLSIASDITI ARNPIRLLQV SLVLWAISYV GTLINSLTLV YIGVLLSLSF PIVYEKYQDH IDEKVNSTSK FVRNISRKFP LPINKEKKHQ
101: ADDLRVWINY VLSIASDITI ARNPIRLLQV SLVLWAISYV GTLINSLTLV YIGVLLSLSF PIVYEKYQDH IDEKVNSTSK FVRNISRKFP LPINKEKKHQ
Arabidopsis Description
Reticulon-like protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LL94]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.