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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • plastid 2
  • endoplasmic reticulum 2
  • extracellular 1
  • vacuole 1
  • plasma membrane 3
  • golgi 1
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:endoplasmic reticulum, plasma membrane, plastid
ChloroP:plastid
iPSORT:plastid
MultiLoc:endoplasmic reticulum
PProwler:secretory
WoLF PSORT:plasma membrane
YLoc:plasma membrane
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY22971 Canola plasma membrane 98.47 98.47
Bra001748.1-P Field mustard plastid 95.92 95.92
CDX82294 Canola plastid 95.92 95.92
CDY46172 Canola plastid 88.27 85.64
CDX99221 Canola plasma membrane 87.24 84.24
AT3G19460.3 Thale cress plasma membrane 82.14 68.8
Zm00001d001901_P002 Maize plasma membrane 46.94 46.46
GSMUA_Achr7P05440_001 Banana peroxisome, plasma membrane, vacuole 52.55 46.19
EES11624 Sorghum plasma membrane 46.43 45.96
CDX71213 Canola plasma membrane 47.45 45.81
CDY48222 Canola cytosol, endoplasmic reticulum, plasma membrane 47.45 45.81
Os04t0670000-01 Rice plasma membrane 45.41 44.72
Zm00001d026575_P001 Maize mitochondrion, peroxisome, plasma membrane, plastid, vacuole 44.9 44.44
TraesCS2A01G544000.1 Wheat plasma membrane 44.9 44.22
TraesCS2D01G545200.1 Wheat plasma membrane 43.88 43.43
TraesCS2B01G574200.2 Wheat plasma membrane 43.88 43.22
GSMUA_Achr4P20190_001 Banana cytosol, plastid 53.06 36.88
CDX67589 Canola golgi, plasma membrane, vacuole 34.69 33.5
HORVU2Hr1G122310.2 Barley cytosol, plasma membrane 31.12 32.8
CDY51584 Canola plasma membrane 33.67 32.51
CDX78209 Canola golgi, plasma membrane, vacuole 32.65 31.22
CDX73507 Canola cytosol, golgi, plasma membrane 32.14 30.73
CDY34396 Canola cytosol, endoplasmic reticulum, nucleus 35.2 27.49
CDY08353 Canola cytosol, endoplasmic reticulum, nucleus 34.69 27.2
CDY36282 Canola plasma membrane 30.61 26.91
CDY66516 Canola endoplasmic reticulum, extracellular 25.51 26.88
CDY38194 Canola cytosol, nucleus, plasma membrane 34.18 26.8
CDY00975 Canola cytosol, endoplasmic reticulum, peroxisome 32.65 26.78
CDY08567 Canola cytosol 32.65 26.56
CDX79993 Canola cytosol, peroxisome, plasma membrane 33.67 26.29
CDY25557 Canola cytosol, endoplasmic reticulum, nucleus 33.67 26.29
CDY42012 Canola cytosol, peroxisome, plasma membrane 33.16 25.9
CDY44123 Canola cytosol, nucleus, plasma membrane 35.71 25.36
CDY08616 Canola plasma membrane 30.61 25.1
CDY57657 Canola cytosol, nucleus, plasma membrane 35.2 25.09
CDY67571 Canola plasma membrane 28.57 25.0
CDY51936 Canola endoplasmic reticulum, peroxisome, plasma membrane 28.57 25.0
CDY52012 Canola cytosol, peroxisome, plasma membrane 32.14 24.8
CDX96038 Canola plasma membrane 26.53 24.64
CDX75962 Canola plasma membrane 28.06 24.55
CDX81500 Canola plasma membrane 26.02 24.52
CDY10954 Canola cytosol 33.67 24.44
CDY53913 Canola cytosol, peroxisome, plasma membrane 31.63 24.41
CDY00916 Canola plasma membrane 29.59 24.27
CDY01898 Canola plasma membrane 26.02 24.06
CDX90792 Canola cytosol, peroxisome, plasma membrane 32.65 23.97
CDY13240 Canola cytosol, peroxisome, plasma membrane 19.39 23.6
CDY41666 Canola cytosol 33.16 23.55
CDY24806 Canola cytosol 32.65 23.36
CDY62522 Canola cytosol 9.18 22.5
CDY07184 Canola cytosol, peroxisome, plasma membrane 26.53 21.4
CDY46067 Canola plasma membrane 22.45 21.15
CDY48510 Canola cytosol 26.02 20.99
CDY05135 Canola mitochondrion 32.65 20.45
CDX76854 Canola plasma membrane 21.43 20.29
CDX89122 Canola extracellular, mitochondrion 14.29 18.3
CDY12701 Canola plasma membrane 26.02 16.89
CDX86802 Canola cytosol, nucleus, peroxisome 20.92 16.73
CDY56712 Canola mitochondrion 28.57 15.77
CDX82165 Canola endoplasmic reticulum, peroxisome, plasma membrane, plastid 19.9 15.73
Protein Annotations
MapMan:13.7.2.1GO:A0A078G975UniProt:A0A078G975EnsemblPlants:CDY22970ProteinID:CDY22970ProteinID:CDY22970.1
GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0005783GO:GO:0005789
GO:GO:0016020GO:GO:0016021EnsemblPlantsGene:GSBRNA2T00021380001InterPro:IPR003388PFAM:PF02453PFscan:PS50845
PANTHER:PTHR10994PANTHER:PTHR10994:SF65InterPro:ReticulonTMHMM:TMhelixUniParc:UPI0004EE6844SEG:seg
Description
BnaC03g40990DReticulon-like protein [Source:UniProtKB/TrEMBL;Acc:A0A078G975]
Coordinates
chrLK032138:+:292682..294480
Molecular Weight (calculated)
21989.0 Da
IEP (calculated)
9.351
GRAVY (calculated)
0.455
Length
196 amino acids
Sequence
(BLAST)
001: MGDSASSSSS SSVHRSLVAD LLLWRNRTGA VILLVSSTAF WFLFERAGYN LLSFVSNVLL LLVAILFLWA KSATLLNRPL PPFPNMEIPE EFAIKSADEI
101: RILINHVLSI PSDITIARNP IRLLQVSFVL WAISYVGTLI NSLTLVYIVV LLSLSVPVVY ENYQEHIDDK LSSTSEVIRN ISRKIPMPVS KEKKYQ
Best Arabidopsis Sequence Match ( AT3G19460.1 )
(BLAST)
001: MGDSVSSSSR VSVHQSLGAG SVADLLLWRN RTGAVILLIS STGFWFLFER AGYNLLSFVS NVLLLLVAIF FLWAKSATVL NRPLPPVPNM EIPEEFANKA
101: ADDLRVWINY VLSIASDITI ARNPIRLLQV SLVLWAISYV GTLINSLTLV YIGVLLSLSF PIVYEKYQDH IDEKVNSTSK FVRNISRKFP LPINKEKKHQ
Arabidopsis Description
Reticulon-like protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LL94]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.