Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 1
- plasma membrane 3
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- golgi 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY51936 | Canola | endoplasmic reticulum, peroxisome, plasma membrane | 97.77 | 97.77 |
| CDY66516 | Canola | endoplasmic reticulum, extracellular | 72.77 | 87.63 |
| CDY67571 | Canola | plasma membrane | 87.05 | 87.05 |
| AT3G18260.1 | Thale cress | plasma membrane | 84.82 | 84.44 |
| KRH48561 | Soybean | plasma membrane | 50.45 | 50.9 |
| KRH39144 | Soybean | plasma membrane | 48.66 | 49.1 |
| PGSC0003DMT400014404 | Potato | cytosol, plasma membrane, vacuole | 20.54 | 48.94 |
| Solyc03g119190.2.1 | Tomato | plasma membrane | 47.77 | 48.86 |
| VIT_17s0000g03260.t01 | Wine grape | plasma membrane | 45.09 | 47.64 |
| KXG33168 | Sorghum | golgi, peroxisome, plasma membrane | 40.62 | 42.13 |
| TraesCS3B01G294700.1 | Wheat | plasma membrane | 41.07 | 42.01 |
| TraesCS3A01G261500.1 | Wheat | plasma membrane | 40.62 | 41.55 |
| GSMUA_Achr2P07230_001 | Banana | golgi, plasma membrane, vacuole | 38.84 | 41.43 |
| Os01t0139000-00 | Rice | plasma membrane | 38.84 | 40.85 |
| EES19907 | Sorghum | cytosol, peroxisome, plasma membrane | 41.07 | 40.71 |
| Os01t0691400-00 | Rice | cytosol, peroxisome | 41.96 | 40.69 |
| HORVU3Hr1G064240.2 | Barley | plasma membrane | 39.29 | 40.18 |
| Zm00001d038910_P001 | Maize | plasma membrane | 40.62 | 40.09 |
| TraesCS1A01G373800.1 | Wheat | cytosol, peroxisome, plasma membrane | 41.07 | 39.32 |
| TraesCS1D01G380400.1 | Wheat | cytosol, peroxisome, plasma membrane | 41.07 | 39.32 |
| GSMUA_Achr8P31770_001 | Banana | peroxisome | 38.84 | 39.01 |
| TraesCS1B01G393700.1 | Wheat | cytosol, peroxisome, plasma membrane | 40.62 | 38.89 |
| Zm00001d011631_P001 | Maize | golgi, peroxisome, plasma membrane | 37.95 | 38.46 |
| TraesCS3D01G050800.1 | Wheat | mitochondrion | 38.84 | 37.18 |
| TraesCS3B01G060400.1 | Wheat | mitochondrion | 38.84 | 36.71 |
| EES02516 | Sorghum | peroxisome, plastid | 35.27 | 36.24 |
| CDX81500 | Canola | plasma membrane | 33.04 | 35.58 |
| CDX96038 | Canola | plasma membrane | 33.48 | 35.55 |
| CDY01898 | Canola | plasma membrane | 33.48 | 35.38 |
| CDY08616 | Canola | plasma membrane | 36.61 | 34.31 |
| CDY00916 | Canola | plasma membrane | 35.71 | 33.47 |
| CDY25557 | Canola | cytosol, endoplasmic reticulum, nucleus | 37.5 | 33.47 |
| CDY34396 | Canola | cytosol, endoplasmic reticulum, nucleus | 37.5 | 33.47 |
| CDY08353 | Canola | cytosol, endoplasmic reticulum, nucleus | 37.05 | 33.2 |
| CDY38194 | Canola | cytosol, nucleus, plasma membrane | 37.05 | 33.2 |
| CDX79993 | Canola | cytosol, peroxisome, plasma membrane | 36.16 | 32.27 |
| CDY53913 | Canola | cytosol, peroxisome, plasma membrane | 36.16 | 31.89 |
| CDY52012 | Canola | cytosol, peroxisome, plasma membrane | 36.16 | 31.89 |
| CDY42012 | Canola | cytosol, peroxisome, plasma membrane | 35.71 | 31.87 |
| CDX90792 | Canola | cytosol, peroxisome, plasma membrane | 37.95 | 31.84 |
| CDY57657 | Canola | cytosol, nucleus, plasma membrane | 37.95 | 30.91 |
| CDY48510 | Canola | cytosol | 33.04 | 30.45 |
| CDY07184 | Canola | cytosol, peroxisome, plasma membrane | 33.04 | 30.45 |
| CDY13240 | Canola | cytosol, peroxisome, plasma membrane | 21.88 | 30.43 |
| CDY44123 | Canola | cytosol, nucleus, plasma membrane | 37.5 | 30.43 |
| CDY10954 | Canola | cytosol | 36.61 | 30.37 |
| CDY36282 | Canola | plasma membrane | 29.46 | 29.6 |
| CDY24806 | Canola | cytosol | 36.16 | 29.56 |
| CDX67589 | Canola | golgi, plasma membrane, vacuole | 26.79 | 29.56 |
| CDY41666 | Canola | cytosol | 36.16 | 29.35 |
| CDY46172 | Canola | plastid | 26.34 | 29.21 |
| CDX99221 | Canola | plasma membrane | 26.34 | 29.06 |
| CDX78209 | Canola | golgi, plasma membrane, vacuole | 26.34 | 28.78 |
| HORVU1Hr1G083110.3 | Barley | plastid | 37.5 | 28.77 |
| CDY51584 | Canola | plasma membrane | 25.89 | 28.57 |
| Zm00001d008590_P001 | Maize | plastid | 16.96 | 28.57 |
| CDX73507 | Canola | cytosol, golgi, plasma membrane | 25.89 | 28.29 |
| CDX82294 | Canola | plastid | 24.55 | 28.06 |
| CDY22971 | Canola | plasma membrane | 24.55 | 28.06 |
| CDY22970 | Canola | plasma membrane | 24.55 | 28.06 |
| CDY00975 | Canola | cytosol, endoplasmic reticulum, peroxisome | 29.91 | 28.03 |
| CDY08567 | Canola | cytosol | 29.91 | 27.8 |
| CDY05135 | Canola | mitochondrion | 37.5 | 26.84 |
| TraesCS3A01G051200.1 | Wheat | cytosol | 38.84 | 26.36 |
| CDX82165 | Canola | endoplasmic reticulum, peroxisome, plasma membrane, plastid | 28.57 | 25.81 |
| CDX71213 | Canola | plasma membrane | 23.21 | 25.62 |
| CDY48222 | Canola | cytosol, endoplasmic reticulum, plasma membrane | 23.21 | 25.62 |
| CDY12701 | Canola | plasma membrane | 34.38 | 25.5 |
| HORVU3Hr1G008400.1 | Barley | cytosol, peroxisome | 38.84 | 25.0 |
| CDY62522 | Canola | cytosol | 8.93 | 25.0 |
| CDX76854 | Canola | plasma membrane | 22.32 | 24.15 |
| CDY46067 | Canola | plasma membrane | 22.32 | 24.04 |
| CDX89122 | Canola | extracellular, mitochondrion | 16.07 | 23.53 |
| GSMUA_AchrUn_... | Banana | golgi | 36.61 | 23.3 |
| CDY56712 | Canola | mitochondrion | 35.27 | 22.25 |
| CDX86802 | Canola | cytosol, nucleus, peroxisome | 24.11 | 22.04 |
Protein Annotations
| EnsemblPlants:CDX75962 | EnsemblPlantsGene:GSBRNA2T00123994001 | GO:A0A078CGR0 | InterPro:IPR003388 | InterPro:Reticulon | PANTHER:PTHR10994 |
| PANTHER:PTHR10994:SF85 | PFAM:PF02453 | PFscan:PS50845 | ProteinID:CDX75962 | ProteinID:CDX75962.1 | SEG:seg |
| TMHMM:TMhelix | UniParc:UPI0004EBC295 | MapMan:13.7.2.1 | : | : | : |
Description
BnaC03g40450D
Coordinates
chrLK031805:-:2198034..2199327
Molecular Weight (calculated)
26088.2 Da
IEP (calculated)
9.362
GRAVY (calculated)
0.161
Length
224 amino acids
Sequence
(BLAST)
(BLAST)
001: MPIFGGSSDS EDERTMHQMT KFFSRQRSIH SIFGGGKFAD ILLWREPKIA ATLAMGVSVF WFLMEVVEYN FITLICHASM TSMLLFFIWS TASDFLNWER
101: PIIPEVVLDE SSFKELARSF HDRFNRMLSK LLDIACGRDP PLFFLTTISL YILSIIGTYF NFMNLLFIGF ISMQTLPVMY ELYEDDVDRV LSKLARKMRK
201: LYRKIDSNVL SKIPRGTVKI KKHT
101: PIIPEVVLDE SSFKELARSF HDRFNRMLSK LLDIACGRDP PLFFLTTISL YILSIIGTYF NFMNLLFIGF ISMQTLPVMY ELYEDDVDRV LSKLARKMRK
201: LYRKIDSNVL SKIPRGTVKI KKHT
001: MPIFTGSSSD SEDERTIHKT TKLFTRQRSI HSIFGGGKVA DILLWREPKI AATLVIGVSI LWFLMEVVEY NFITLICHAS MTSMLFFFIW STASDFLNWE
101: RPLIPEVVLD ESSFKQLARS FHVRFNQILT KLLDVACGRD PPLFFLTTIS LYIVSIIGTY FNFVNLLFIG FVSMQTLPVM YEMYEDDVDT AAGKLMRKMK
201: KLYKKVDTNV LSKIPRGTVK NKKFT
101: RPLIPEVVLD ESSFKQLARS FHVRFNQILT KLLDVACGRD PPLFFLTTIS LYIVSIIGTY FNFVNLLFIG FVSMQTLPVM YEMYEDDVDT AAGKLMRKMK
201: KLYKKVDTNV LSKIPRGTVK NKKFT
Arabidopsis Description
RTNLB9Reticulon-like protein B9 [Source:UniProtKB/Swiss-Prot;Acc:Q9LJQ5]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.