Factsheet for Os01t0139000-00

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 1
mitochondrion 5
peroxisome 1
plasma membrane 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	mitochondrion, peroxisome, plastid, secretory
BaCelLo:	plastid
iPSORT:	mitochondrion
MultiLoc:	peroxisome
Plant-mPloc:	plasma membrane
Predotar:	mitochondrion
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	mitochondrion

plasma membrane: 27800704

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES02516	Sorghum	peroxisome, plastid	69.01	67.43
TraesCS3D01G050800.1	Wheat	mitochondrion	69.48	63.25
TraesCS3B01G060400.1	Wheat	mitochondrion	67.61	60.76
Zm00001d008590_P001	Maize	plastid	29.58	47.37
GSMUA_Achr2P07230_001	Banana	golgi, plasma membrane, vacuole	45.54	46.19
GSMUA_Achr8P31770_001	Banana	peroxisome	46.95	44.84
TraesCS3A01G051200.1	Wheat	cytosol	69.01	44.55
KRH35899	Soybean	plasma membrane	40.85	41.04
HORVU3Hr1G008400.1	Barley	cytosol, peroxisome	66.67	40.8
PGSC0003DMT400014404	Potato	cytosol, plasma membrane, vacuole	17.84	40.43
Os01t0691400-00	Rice	cytosol, peroxisome	43.19	39.83
CDY66516	Canola	endoplasmic reticulum, extracellular	34.27	39.25
CDY67571	Canola	plasma membrane	40.85	38.84
CDY51936	Canola	endoplasmic reticulum, peroxisome, plasma membrane	40.85	38.84
CDX75962	Canola	plasma membrane	40.85	38.84
VIT_17s0000g03260.t01	Wine grape	plasma membrane	38.5	38.68
KRH48561	Soybean	plasma membrane	39.91	38.29
Bra037594.1-P	Field mustard	plasma membrane	39.91	37.95
AT3G18260.1	Thale cress	plasma membrane	39.91	37.78
KRH39144	Soybean	plasma membrane	38.5	36.94
PGSC0003DMT400078544	Potato	endoplasmic reticulum, plasma membrane, vacuole	26.29	36.36
Solyc05g008890.2.1	Tomato	plasma membrane	37.56	36.2
Solyc03g119190.2.1	Tomato	plasma membrane	37.09	36.07
CDX96038	Canola	plasma membrane	34.74	35.07
AT1G68230.2	Thale cress	plasma membrane	35.21	34.88
CDX81500	Canola	plasma membrane	33.8	34.62
Bra004291.1-P	Field mustard	plasma membrane	34.27	34.6
Os02t0265900-01	Rice	cytosol, peroxisome, plasma membrane	37.09	34.35
CDY01898	Canola	plasma membrane	33.33	33.49
Os01t0226300-01	Rice	plasma membrane	27.7	33.15
Os05t0312500-01	Rice	plasma membrane	38.97	33.07
Os04t0670000-01	Rice	plasma membrane	30.52	32.66
Os05t0526400-01	Rice	plasma membrane	37.56	31.87
Os01t0736900-01	Rice	plasma membrane	37.56	31.62
Os03t0781700-01	Rice	cytosol, peroxisome, plasma membrane	33.8	29.15
Os04t0367400-02	Rice	plasma membrane	29.11	29.11
Os06t0503400-01	Rice	plasma membrane	35.21	28.3
Os07t0142000-01	Rice	plasma membrane	31.92	27.64
Os01t0851300-01	Rice	golgi, plasma membrane, vacuole	26.29	27.59
GSMUA_AchrUn_...	Banana	golgi	44.6	26.99
Os03t0336600-02	Rice	plasma membrane	27.7	25.54
Bra033951.1-P	Field mustard	plasma membrane	34.74	24.5
CDY12701	Canola	plasma membrane	34.74	24.5
VIT_01s0011g04030.t01	Wine grape	cytosol	37.09	21.12

Protein Annotations

MapMan:13.7.2.1	EntrezGene:4325472	ProteinID:BAD61299.1	ProteinID:BAD61476.1	ProteinID:BAF03889.1	ProteinID:BAS70302.1
ProteinID:EAZ10470.1	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783
GO:GO:0005789	GO:GO:0016020	GO:GO:0016021	InterPro:IPR003388	EnsemblPlantsGene:Os01g0139000	EnsemblPlants:Os01t0139000-00
PFAM:PF02453	PFscan:PS50845	PANTHER:PTHR10994	PANTHER:PTHR10994:SF74	UniProt:Q5ZC50	InterPro:Reticulon
TMHMM:TMhelix	UniParc:UPI000045050F	RefSeq:XP_015642310.1	:	:	:

Description

Reticulon family protein. (Os01t0139000-00)

Coordinates

chr1:+:2080112..2081303

Molecular Weight (calculated)

23934.4 Da

IEP (calculated)

9.133

GRAVY (calculated)

0.452

Length

213 amino acids

Sequence
(BLAST)

001: MAITVRTHRT TKLFGRERPL HDALGGHKAA DIILWRERRV SASIVAGATV AWYLFEVAEY HFLSLACYLA MLGMLVVFIW ANASAFFNLP APRIPEIFVS
101: ERTTRQVILA LHSRLTWFVH RLYDIACGKD IKMFILTVFS LFIASVIASC FSSLTLLYLV VLGTMTLPVM YENYESEVDH LVSTAVHDLR SHVGDIDSGV
201: FKKIPRGRGA TAN

Best Arabidopsis Sequence Match ( AT3G18260.1 )
(BLAST)

001: MPIFTGSSSD SEDERTIHKT TKLFTRQRSI HSIFGGGKVA DILLWREPKI AATLVIGVSI LWFLMEVVEY NFITLICHAS MTSMLFFFIW STASDFLNWE
101: RPLIPEVVLD ESSFKQLARS FHVRFNQILT KLLDVACGRD PPLFFLTTIS LYIVSIIGTY FNFVNLLFIG FVSMQTLPVM YEMYEDDVDT AAGKLMRKMK
201: KLYKKVDTNV LSKIPRGTVK NKKFT

Arabidopsis Description

RTNLB9Reticulon-like protein B9 [Source:UniProtKB/Swiss-Prot;Acc:Q9LJQ5]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.