Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G050800.1 | Wheat | mitochondrion | 67.27 | 94.87 |
| TraesCS3B01G060400.1 | Wheat | mitochondrion | 67.88 | 94.51 |
| HORVU3Hr1G008400.1 | Barley | cytosol, peroxisome | 75.76 | 71.84 |
| EES02516 | Sorghum | peroxisome, plastid | 46.36 | 70.18 |
| Os01t0139000-00 | Rice | plasma membrane | 44.55 | 69.01 |
| Zm00001d008590_P001 | Maize | plastid | 21.82 | 54.14 |
| GSMUA_Achr2P07230_001 | Banana | golgi, plasma membrane, vacuole | 27.88 | 43.81 |
| CDY66516 | Canola | endoplasmic reticulum, extracellular | 23.33 | 41.4 |
| TraesCS1A01G373800.1 | Wheat | cytosol, peroxisome, plasma membrane | 28.48 | 40.17 |
| GSMUA_Achr8P31770_001 | Banana | peroxisome | 26.67 | 39.46 |
| CDY67571 | Canola | plasma membrane | 26.67 | 39.29 |
| TraesCS3A01G261500.1 | Wheat | plasma membrane | 26.06 | 39.27 |
| CDY51936 | Canola | endoplasmic reticulum, peroxisome, plasma membrane | 26.36 | 38.84 |
| CDX75962 | Canola | plasma membrane | 26.36 | 38.84 |
| Bra037594.1-P | Field mustard | plasma membrane | 26.36 | 38.84 |
| PGSC0003DMT400014404 | Potato | cytosol, plasma membrane, vacuole | 10.91 | 38.3 |
| AT3G18260.1 | Thale cress | plasma membrane | 26.06 | 38.22 |
| VIT_17s0000g03260.t01 | Wine grape | plasma membrane | 24.24 | 37.74 |
| KRH35899 | Soybean | plasma membrane | 23.94 | 37.26 |
| AT1G68230.2 | Thale cress | plasma membrane | 24.24 | 37.21 |
| Solyc03g119190.2.1 | Tomato | plasma membrane | 24.24 | 36.53 |
| PGSC0003DMT400078544 | Potato | endoplasmic reticulum, plasma membrane, vacuole | 16.97 | 36.36 |
| Solyc05g008890.2.1 | Tomato | plasma membrane | 24.24 | 36.2 |
| CDX96038 | Canola | plasma membrane | 23.03 | 36.02 |
| KRH48561 | Soybean | plasma membrane | 23.94 | 35.59 |
| Bra004291.1-P | Field mustard | plasma membrane | 22.73 | 35.55 |
| CDX81500 | Canola | plasma membrane | 22.12 | 35.1 |
| CDY01898 | Canola | plasma membrane | 22.12 | 34.43 |
| KRH39144 | Soybean | plasma membrane | 23.03 | 34.23 |
| TraesCS3A01G278800.1 | Wheat | golgi | 23.64 | 31.45 |
| TraesCS1A01G081500.1 | Wheat | cytosol, endoplasmic reticulum, nucleus | 23.03 | 30.28 |
| TraesCS1A01G346800.3 | Wheat | plasma membrane | 23.03 | 30.16 |
| TraesCS7A01G341800.1 | Wheat | cytosol, peroxisome, plasma membrane, plastid | 23.33 | 29.62 |
| TraesCS2A01G544000.1 | Wheat | plasma membrane | 17.27 | 28.64 |
| TraesCS2A01G254300.1 | Wheat | cytosol, peroxisome, vacuole | 21.21 | 28.34 |
| TraesCS4A01G135900.1 | Wheat | peroxisome | 19.39 | 28.19 |
| GSMUA_AchrUn_... | Banana | golgi | 30.0 | 28.12 |
| CDY12701 | Canola | plasma membrane | 24.85 | 27.15 |
| Bra033951.1-P | Field mustard | plasma membrane | 24.85 | 27.15 |
| TraesCS5A01G418200.1 | Wheat | cytosol, peroxisome, plasma membrane | 21.21 | 26.82 |
| TraesCS3A01G151200.1 | Wheat | cytosol, peroxisome, plasma membrane | 24.85 | 25.47 |
| VIT_01s0011g04030.t01 | Wine grape | cytosol | 28.48 | 25.13 |
Protein Annotations
| EnsemblPlants:TraesCS3A01G051200.1 | EnsemblPlantsGene:TraesCS3A01G051200 | InterPro:IPR003388 | InterPro:Reticulon | PANTHER:PTHR10994 | PANTHER:PTHR10994:SF74 |
| PFAM:PF02453 | PFscan:PS50845 | SEG:seg | TMHMM:TMhelix | MapMan:13.7.2.1 | : |
Description
No Description!
Coordinates
chr3A:+:27577899..27579241
Molecular Weight (calculated)
36710.5 Da
IEP (calculated)
10.055
GRAVY (calculated)
-0.125
Length
330 amino acids
Sequence
(BLAST)
(BLAST)
001: MSPPQKETER GSICQQNPES QGLDQIPTPK GTWEPKYIFA EQDCTPKYQT KDLSQSYALL SPLKVAKVSK PVHSGYKNHN LNGKLHTENL KPTSKMAMGG
101: GSHLQGHRAP RLFGRERPVH AALGGREAAD IILWRRPKVS ASILGAATAA WGLFEVAEYH FLTLACYAAM ITMLTFFIWT NASAFLNLPV PRIPETILSE
201: RTAKQVILAL HRRLTWFVHR LYAIACGEDI KKFIMTVVSL YIASVVATCF SSLTLLYLVV FFTMTVPALY ERYEHEVEHL VATGARDVRT HLAKVDSGVL
301: RKIPRGKGAT TAAHGTTANN VHGWHRSHVN
101: GSHLQGHRAP RLFGRERPVH AALGGREAAD IILWRRPKVS ASILGAATAA WGLFEVAEYH FLTLACYAAM ITMLTFFIWT NASAFLNLPV PRIPETILSE
201: RTAKQVILAL HRRLTWFVHR LYAIACGEDI KKFIMTVVSL YIASVVATCF SSLTLLYLVV FFTMTVPALY ERYEHEVEHL VATGARDVRT HLAKVDSGVL
301: RKIPRGKGAT TAAHGTTANN VHGWHRSHVN
001: MPDKNIVEDV IGDLVDNFTE TVQKNKHGSS FFEQEDSVSS RFNRLFDRQK PIHHVLGGGK SADVLLWRNK KISASVLMGA TAIWVLFEWI NFHFLSLVCY
101: ALLLGMIAQF VWSNASGFLN RSQSRVPRLV LPKDFFAEVG VAVGKEVNRG LLFLQDLACK GNLKQFLMAV IGLWVAAMVG SCCNFLTVLY IGFVGAHTMP
201: VLYERYEDEV DGFMDSMIMK FHSHYKKLDT GFLSRIPSGK FGLKKRE
101: ALLLGMIAQF VWSNASGFLN RSQSRVPRLV LPKDFFAEVG VAVGKEVNRG LLFLQDLACK GNLKQFLMAV IGLWVAAMVG SCCNFLTVLY IGFVGAHTMP
201: VLYERYEDEV DGFMDSMIMK FHSHYKKLDT GFLSRIPSGK FGLKKRE
Arabidopsis Description
Reticulon family protein [Source:TAIR;Acc:AT3G10260]
SUBAcon: [peroxisome,cytosol,plasma membrane]
SUBAcon: [peroxisome,cytosol,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.