Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- golgi 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3B01G060400.1 | Wheat | mitochondrion | 96.15 | 94.94 |
| EES02516 | Sorghum | peroxisome, plastid | 67.09 | 72.02 |
| Os01t0139000-00 | Rice | plasma membrane | 63.25 | 69.48 |
| TraesCS3A01G051200.1 | Wheat | cytosol | 94.87 | 67.27 |
| HORVU3Hr1G008400.1 | Barley | cytosol, peroxisome | 91.88 | 61.78 |
| Zm00001d008590_P001 | Maize | plastid | 31.2 | 54.89 |
| GSMUA_Achr2P07230_001 | Banana | golgi, plasma membrane, vacuole | 41.03 | 45.71 |
| GSMUA_Achr8P31770_001 | Banana | peroxisome | 39.32 | 41.26 |
| TraesCS1D01G380400.1 | Wheat | cytosol, peroxisome, plasma membrane | 41.03 | 41.03 |
| CDY66516 | Canola | endoplasmic reticulum, extracellular | 32.48 | 40.86 |
| CDX75962 | Canola | plasma membrane | 37.18 | 38.84 |
| CDY51936 | Canola | endoplasmic reticulum, peroxisome, plasma membrane | 37.18 | 38.84 |
| CDY67571 | Canola | plasma membrane | 37.18 | 38.84 |
| KRH35899 | Soybean | plasma membrane | 35.04 | 38.68 |
| Bra037594.1-P | Field mustard | plasma membrane | 36.75 | 38.39 |
| AT3G18260.1 | Thale cress | plasma membrane | 36.32 | 37.78 |
| PGSC0003DMT400078544 | Potato | endoplasmic reticulum, plasma membrane, vacuole | 24.79 | 37.66 |
| Solyc03g119190.2.1 | Tomato | plasma membrane | 35.04 | 37.44 |
| VIT_17s0000g03260.t01 | Wine grape | plasma membrane | 33.76 | 37.26 |
| PGSC0003DMT400014404 | Potato | cytosol, plasma membrane, vacuole | 14.96 | 37.23 |
| Solyc05g008890.2.1 | Tomato | plasma membrane | 35.04 | 37.1 |
| AT1G68230.2 | Thale cress | plasma membrane | 33.76 | 36.74 |
| CDX96038 | Canola | plasma membrane | 32.91 | 36.49 |
| KRH48561 | Soybean | plasma membrane | 34.19 | 36.04 |
| Bra004291.1-P | Field mustard | plasma membrane | 32.48 | 36.02 |
| CDX81500 | Canola | plasma membrane | 31.62 | 35.58 |
| TraesCS1D01G349700.1 | Wheat | cytosol, nucleus, plasma membrane | 37.61 | 35.48 |
| CDY01898 | Canola | plasma membrane | 31.62 | 34.91 |
| KRH39144 | Soybean | plasma membrane | 32.91 | 34.68 |
| TraesCS3D01G279100.1 | Wheat | cytosol, nucleus, plasma membrane | 34.62 | 32.66 |
| TraesCS7D01G337800.1 | Wheat | cytosol, peroxisome, plasma membrane, plastid | 33.33 | 30.0 |
| TraesCS3D01G159100.1 | Wheat | cytosol, nucleus, plasma membrane | 35.04 | 28.67 |
| TraesCS2D01G254800.1 | Wheat | cytosol, peroxisome, vacuole | 29.91 | 28.34 |
| TraesCS5D01G426200.1 | Wheat | cytosol, peroxisome, plasma membrane | 31.2 | 28.19 |
| TraesCS4D01G171300.2 | Wheat | peroxisome | 26.5 | 27.31 |
| TraesCS2D01G545200.1 | Wheat | plasma membrane | 23.08 | 27.27 |
| TraesCS1D01G083100.2 | Wheat | mitochondrion | 33.33 | 26.99 |
| GSMUA_AchrUn_... | Banana | golgi | 39.32 | 26.14 |
| Bra033951.1-P | Field mustard | plasma membrane | 32.91 | 25.5 |
| CDY12701 | Canola | plasma membrane | 32.91 | 25.5 |
| VIT_01s0011g04030.t01 | Wine grape | cytosol | 38.03 | 23.8 |
Protein Annotations
| EnsemblPlants:TraesCS3D01G050800.1 | EnsemblPlantsGene:TraesCS3D01G050800 | InterPro:IPR003388 | InterPro:Reticulon | PANTHER:PTHR10994 | PANTHER:PTHR10994:SF74 |
| PFAM:PF02453 | PFscan:PS50845 | SEG:seg | TMHMM:TMhelix | MapMan:13.7.2.1 | : |
Description
No Description!
Coordinates
chr3D:+:19954449..19955583
Molecular Weight (calculated)
25956.8 Da
IEP (calculated)
10.158
GRAVY (calculated)
0.239
Length
234 amino acids
Sequence
(BLAST)
(BLAST)
001: MATGGSHFNG HRAPRLFGRE RPVHAALGGR EAADIILWRR PKVSASILGA ATAAWALFEV AEYHFLTLAC YAAMIAMLTF FIWTNASAFM NLPVPRIPET
101: ILSERTAKQV ILGLHRRLTW FVHRLYAIAC GEDIKKFIMT VVSLYIASVV ATCFSSLTLL YLVVLCTMTV PALYERYEHE VDHLVATGAR DVRTHFAKMD
201: SGVLRKIPRG KGATTAAHGT TANNVHGWHR SHVN
101: ILSERTAKQV ILGLHRRLTW FVHRLYAIAC GEDIKKFIMT VVSLYIASVV ATCFSSLTLL YLVVLCTMTV PALYERYEHE VDHLVATGAR DVRTHFAKMD
201: SGVLRKIPRG KGATTAAHGT TANNVHGWHR SHVN
001: MPDKNIVEDV IGDLVDNFTE TVQKNKHGSS FFEQEDSVSS RFNRLFDRQK PIHHVLGGGK SADVLLWRNK KISASVLMGA TAIWVLFEWI NFHFLSLVCY
101: ALLLGMIAQF VWSNASGFLN RSQSRVPRLV LPKDFFAEVG VAVGKEVNRG LLFLQDLACK GNLKQFLMAV IGLWVAAMVG SCCNFLTVLY IGFVGAHTMP
201: VLYERYEDEV DGFMDSMIMK FHSHYKKLDT GFLSRIPSGK FGLKKRE
101: ALLLGMIAQF VWSNASGFLN RSQSRVPRLV LPKDFFAEVG VAVGKEVNRG LLFLQDLACK GNLKQFLMAV IGLWVAAMVG SCCNFLTVLY IGFVGAHTMP
201: VLYERYEDEV DGFMDSMIMK FHSHYKKLDT GFLSRIPSGK FGLKKRE
Arabidopsis Description
Reticulon family protein [Source:TAIR;Acc:AT3G10260]
SUBAcon: [peroxisome,cytosol,plasma membrane]
SUBAcon: [peroxisome,cytosol,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.