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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 4
  • endoplasmic reticulum 2
  • extracellular 1
  • vacuole 1
  • plasma membrane 2
  • golgi 1
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:endoplasmic reticulum, plasma membrane, plastid
BaCelLo:plastid
ChloroP:plastid
iPSORT:plastid
MultiLoc:endoplasmic reticulum
PProwler:secretory
WoLF PSORT:plastid
YLoc:plasma membrane
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra001748.1-P Field mustard plastid 98.98 98.98
CDY22971 Canola plasma membrane 97.45 97.45
CDY22970 Canola plasma membrane 95.92 95.92
CDY46172 Canola plastid 91.33 88.61
CDX99221 Canola plasma membrane 90.31 87.19
AT3G19460.3 Thale cress plasma membrane 84.69 70.94
GSMUA_Achr7P05440_001 Banana peroxisome, plasma membrane, vacuole 54.08 47.53
Zm00001d001901_P002 Maize plasma membrane 47.96 47.47
EES11624 Sorghum plasma membrane 47.96 47.47
Zm00001d026575_P001 Maize mitochondrion, peroxisome, plasma membrane, plastid, vacuole 46.94 46.46
CDX71213 Canola plasma membrane 47.96 46.31
CDY48222 Canola cytosol, endoplasmic reticulum, plasma membrane 47.96 46.31
Os04t0670000-01 Rice plasma membrane 46.94 46.23
TraesCS2D01G545200.1 Wheat plasma membrane 46.43 45.96
TraesCS2B01G574200.2 Wheat plasma membrane 46.43 45.73
TraesCS2A01G544000.1 Wheat plasma membrane 46.43 45.73
GSMUA_Achr4P20190_001 Banana cytosol, plastid 54.08 37.59
CDX67589 Canola golgi, plasma membrane, vacuole 35.71 34.48
HORVU2Hr1G122310.2 Barley cytosol, plasma membrane 32.14 33.87
CDY51584 Canola plasma membrane 34.69 33.5
CDX78209 Canola golgi, plasma membrane, vacuole 33.67 32.2
CDX73507 Canola cytosol, golgi, plasma membrane 33.16 31.71
CDY36282 Canola plasma membrane 32.65 28.7
CDY00975 Canola cytosol, endoplasmic reticulum, peroxisome 34.18 28.03
CDY08567 Canola cytosol 34.18 27.8
CDY34396 Canola cytosol, endoplasmic reticulum, nucleus 35.2 27.49
CDY08353 Canola cytosol, endoplasmic reticulum, nucleus 34.69 27.2
CDY66516 Canola endoplasmic reticulum, extracellular 25.51 26.88
CDY38194 Canola cytosol, nucleus, plasma membrane 34.18 26.8
CDY25557 Canola cytosol, endoplasmic reticulum, nucleus 34.18 26.69
CDX79993 Canola cytosol, peroxisome, plasma membrane 33.67 26.29
CDY42012 Canola cytosol, peroxisome, plasma membrane 33.16 25.9
CDY44123 Canola cytosol, nucleus, plasma membrane 35.71 25.36
CDY52012 Canola cytosol, peroxisome, plasma membrane 32.65 25.2
CDY10954 Canola cytosol 34.69 25.19
CDY08616 Canola plasma membrane 30.61 25.1
CDY57657 Canola cytosol, nucleus, plasma membrane 35.2 25.09
CDY67571 Canola plasma membrane 28.57 25.0
CDY51936 Canola endoplasmic reticulum, peroxisome, plasma membrane 28.57 25.0
CDY53913 Canola cytosol, peroxisome, plasma membrane 32.14 24.8
CDX96038 Canola plasma membrane 26.53 24.64
CDX75962 Canola plasma membrane 28.06 24.55
CDX81500 Canola plasma membrane 26.02 24.52
CDX90792 Canola cytosol, peroxisome, plasma membrane 33.16 24.34
CDY00916 Canola plasma membrane 29.59 24.27
CDY13240 Canola cytosol, peroxisome, plasma membrane 19.9 24.22
CDY01898 Canola plasma membrane 26.02 24.06
CDY41666 Canola cytosol 33.16 23.55
CDY24806 Canola cytosol 32.65 23.36
CDY62522 Canola cytosol 9.18 22.5
CDY07184 Canola cytosol, peroxisome, plasma membrane 27.55 22.22
CDY48510 Canola cytosol 27.04 21.81
CDY46067 Canola plasma membrane 22.45 21.15
CDY05135 Canola mitochondrion 33.16 20.77
CDX76854 Canola plasma membrane 21.43 20.29
CDX89122 Canola extracellular, mitochondrion 14.8 18.95
CDX86802 Canola cytosol, nucleus, peroxisome 21.43 17.14
CDY12701 Canola plasma membrane 26.02 16.89
CDX82165 Canola endoplasmic reticulum, peroxisome, plasma membrane, plastid 20.92 16.53
CDY56712 Canola mitochondrion 28.57 15.77
Protein Annotations
EnsemblPlants:CDX82294EnsemblPlantsGene:GSBRNA2T00137401001GO:A0A078D227InterPro:IPR003388InterPro:ReticulonPANTHER:PTHR10994
PANTHER:PTHR10994:SF65PFAM:PF02453PFscan:PS50845ProteinID:CDX82294ProteinID:CDX82294.1SEG:seg
TMHMM:TMhelixUniParc:UPI0004EF1004MapMan:13.7.2.1:::
Description
BnaA03g35270D
Coordinates
chrLK031828:+:443739..445492
Molecular Weight (calculated)
21842.9 Da
IEP (calculated)
9.627
GRAVY (calculated)
0.480
Length
196 amino acids
Sequence
(BLAST)
001: MGDSASSSSS SSVHKSLVAD LLLWRNRTGA VILLVSSTGF WFLFERAGYN LLSFVSNVLL LLVAILFLWA KSASLLNRPL PPVPNMEIPE EFAIKAADEI
101: RVLINHVLSI ASDITIARNP IRLLQVSFVL WAISYVGTLI NSLTLVYIVV LLSLSVPVVY EKYQEHIDDK LSSTSEVIRN ISRKIPMPVS KEKKYQ
Best Arabidopsis Sequence Match ( AT3G19460.1 )
(BLAST)
001: MGDSVSSSSR VSVHQSLGAG SVADLLLWRN RTGAVILLIS STGFWFLFER AGYNLLSFVS NVLLLLVAIF FLWAKSATVL NRPLPPVPNM EIPEEFANKA
101: ADDLRVWINY VLSIASDITI ARNPIRLLQV SLVLWAISYV GTLINSLTLV YIGVLLSLSF PIVYEKYQDH IDEKVNSTSK FVRNISRKFP LPINKEKKHQ
Arabidopsis Description
Reticulon-like protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LL94]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.