Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 3
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY48222 | Canola | cytosol, endoplasmic reticulum, plasma membrane | 98.03 | 98.03 |
| AT2G15280.1 | Thale cress | plasma membrane | 77.34 | 78.11 |
| VIT_03s0180g00170.t01 | Wine grape | endoplasmic reticulum, plasma membrane, vacuole | 49.75 | 48.79 |
| CDX82294 | Canola | plastid | 46.31 | 47.96 |
| KRG91024 | Soybean | plasma membrane | 47.78 | 47.55 |
| CDY46172 | Canola | plastid | 47.29 | 47.52 |
| CDY22970 | Canola | plasma membrane | 45.81 | 47.45 |
| CDY22971 | Canola | plasma membrane | 45.81 | 47.45 |
| CDX99221 | Canola | plasma membrane | 47.29 | 47.29 |
| KRH35738 | Soybean | endoplasmic reticulum | 47.29 | 47.06 |
| PGSC0003DMT400066222 | Potato | plasma membrane | 46.8 | 46.57 |
| Solyc01g107620.2.1 | Tomato | plasma membrane | 46.8 | 43.38 |
| EES11624 | Sorghum | plasma membrane | 38.92 | 39.9 |
| Zm00001d001901_P002 | Maize | plasma membrane | 38.92 | 39.9 |
| TraesCS2A01G544000.1 | Wheat | plasma membrane | 38.42 | 39.2 |
| Zm00001d026575_P001 | Maize | mitochondrion, peroxisome, plasma membrane, plastid, vacuole | 36.95 | 37.88 |
| Os04t0670000-01 | Rice | plasma membrane | 36.95 | 37.69 |
| GSMUA_Achr7P05440_001 | Banana | peroxisome, plasma membrane, vacuole | 40.89 | 37.22 |
| TraesCS2B01G574200.2 | Wheat | plasma membrane | 36.45 | 37.19 |
| TraesCS2D01G545200.1 | Wheat | plasma membrane | 35.47 | 36.36 |
| HORVU2Hr1G122310.2 | Barley | cytosol, plasma membrane | 27.59 | 30.11 |
| CDX67589 | Canola | golgi, plasma membrane, vacuole | 30.05 | 30.05 |
| GSMUA_Achr4P20190_001 | Banana | cytosol, plastid | 41.38 | 29.79 |
| CDY51584 | Canola | plasma membrane | 29.06 | 29.06 |
| CDX73507 | Canola | cytosol, golgi, plasma membrane | 27.59 | 27.32 |
| CDX78209 | Canola | golgi, plasma membrane, vacuole | 27.59 | 27.32 |
| CDY08353 | Canola | cytosol, endoplasmic reticulum, nucleus | 32.51 | 26.4 |
| CDY66516 | Canola | endoplasmic reticulum, extracellular | 24.14 | 26.34 |
| CDY36282 | Canola | plasma membrane | 28.57 | 26.01 |
| CDY38194 | Canola | cytosol, nucleus, plasma membrane | 32.02 | 26.0 |
| CDX81500 | Canola | plasma membrane | 26.6 | 25.96 |
| CDY25557 | Canola | cytosol, endoplasmic reticulum, nucleus | 32.02 | 25.9 |
| CDY08567 | Canola | cytosol | 30.54 | 25.73 |
| CDX96038 | Canola | plasma membrane | 26.6 | 25.59 |
| CDY00975 | Canola | cytosol, endoplasmic reticulum, peroxisome | 30.05 | 25.52 |
| CDY34396 | Canola | cytosol, endoplasmic reticulum, nucleus | 31.53 | 25.5 |
| CDY01898 | Canola | plasma membrane | 26.11 | 25.0 |
| CDY00916 | Canola | plasma membrane | 28.08 | 23.85 |
| CDY51936 | Canola | endoplasmic reticulum, peroxisome, plasma membrane | 26.11 | 23.66 |
| CDY53913 | Canola | cytosol, peroxisome, plasma membrane | 29.56 | 23.62 |
| CDY13240 | Canola | cytosol, peroxisome, plasma membrane | 18.72 | 23.6 |
| CDY08616 | Canola | plasma membrane | 27.59 | 23.43 |
| CDY10954 | Canola | cytosol | 31.03 | 23.33 |
| CDY57657 | Canola | cytosol, nucleus, plasma membrane | 31.53 | 23.27 |
| CDY52012 | Canola | cytosol, peroxisome, plasma membrane | 29.06 | 23.23 |
| CDX75962 | Canola | plasma membrane | 25.62 | 23.21 |
| CDY67571 | Canola | plasma membrane | 25.62 | 23.21 |
| CDY44123 | Canola | cytosol, nucleus, plasma membrane | 31.03 | 22.83 |
| CDX79993 | Canola | cytosol, peroxisome, plasma membrane | 28.08 | 22.71 |
| CDY42012 | Canola | cytosol, peroxisome, plasma membrane | 27.59 | 22.31 |
| CDY07184 | Canola | cytosol, peroxisome, plasma membrane | 26.6 | 22.22 |
| CDY41666 | Canola | cytosol | 30.05 | 22.1 |
| CDY24806 | Canola | cytosol | 29.56 | 21.9 |
| CDY48510 | Canola | cytosol | 26.11 | 21.81 |
| CDX90792 | Canola | cytosol, peroxisome, plasma membrane | 28.57 | 21.72 |
| CDX76854 | Canola | plasma membrane | 21.67 | 21.26 |
| CDY62522 | Canola | cytosol | 8.37 | 21.25 |
| CDY46067 | Canola | plasma membrane | 21.67 | 21.15 |
| CDY05135 | Canola | mitochondrion | 28.57 | 18.53 |
| CDY12701 | Canola | plasma membrane | 27.09 | 18.21 |
| CDX86802 | Canola | cytosol, nucleus, peroxisome | 20.69 | 17.14 |
| CDX89122 | Canola | extracellular, mitochondrion | 12.81 | 16.99 |
| CDX82165 | Canola | endoplasmic reticulum, peroxisome, plasma membrane, plastid | 19.7 | 16.13 |
| CDY56712 | Canola | mitochondrion | 26.6 | 15.21 |
Protein Annotations
| EnsemblPlants:CDX71213 | EnsemblPlantsGene:GSBRNA2T00144780001 | GO:A0A078C862 | InterPro:IPR003388 | InterPro:Reticulon | PANTHER:PTHR10994 |
| PANTHER:PTHR10994:SF125 | PFAM:PF02453 | PFscan:PS50845 | ProteinID:CDX71213 | ProteinID:CDX71213.1 | TMHMM:TMhelix |
| UniParc:UPI0004EEFA0B | MapMan:13.7.2.1 | : | : | : | : |
Description
BnaC07g04920D
Coordinates
chrLK031792:+:1197057..1198006
Molecular Weight (calculated)
23367.5 Da
IEP (calculated)
10.466
GRAVY (calculated)
0.457
Length
203 amino acids
Sequence
(BLAST)
(BLAST)
001: MDKKSHLLQS IGNASVADLV MWKNKRGGIL LLGSATLFWI LFEKCGYSFF PFVANIQLLV VVILFLWAKS AILFNRPMPE LPNLEITEAS LLMVADPLRL
101: LINTLLSIAR DIYVNRNAKQ LFRVSVVLWT ISLVGSFLNF FTILYLGIVL GMLIPILYER YQDHIDEKLS VTHRMIQTQF RKIDERLLQK LIAKPTSKIK
201: KMQ
101: LINTLLSIAR DIYVNRNAKQ LFRVSVVLWT ISLVGSFLNF FTILYLGIVL GMLIPILYER YQDHIDEKLS VTHRMIQTQF RKIDERLLQK LIAKPTSKIK
201: KMQ
001: MEESVHQSIR FGSVADLIMW KNRRGGFLLL GSTTLLWFLF EKCGYSFFPF VVNTQLLSVV ILFLWAKSAI LFNRPMPQLP NLEITEEFVF MVADAIRVWI
101: NTVLAVAREI YVGRNAKQLF RVSVVLWTVS FVGNFLNFLT ILYLGVVLSL LIPFLYERYQ DLIDEKLSLT HRVIQTQYRK IDERLLQKII AKPTNKIKKM
201: Q
101: NTVLAVAREI YVGRNAKQLF RVSVVLWTVS FVGNFLNFLT ILYLGVVLSL LIPFLYERYQ DLIDEKLSLT HRVIQTQYRK IDERLLQKII AKPTNKIKKM
201: Q
Arabidopsis Description
RTNLB10Reticulon-like protein B10 [Source:UniProtKB/Swiss-Prot;Acc:Q6NPD8]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.