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Thale cress
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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol, nucleus, endoplasmic reticulum

Predictor Summary:
  • nucleus 2
  • cytosol 1
  • extracellular 1
  • golgi 1
  • plasma membrane 1
  • endoplasmic reticulum 2
  • vacuole 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, endoplasmic reticulum, nucleus
Any Predictor:cytosol, endoplasmic reticulum, nucleus
BaCelLo:nucleus
MultiLoc:cytosol
PProwler:secretory
WoLF PSORT:endoplasmic reticulum
YLoc:nucleus
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY25557 Canola cytosol, endoplasmic reticulum, nucleus 81.55 88.05
CDY08353 Canola cytosol, endoplasmic reticulum, nucleus 80.07 86.8
CDY38194 Canola cytosol, nucleus, plasma membrane 80.07 86.8
CDY34396 Canola cytosol, endoplasmic reticulum, nucleus 80.07 86.45
Bra027757.1-P Field mustard cytosol, endoplasmic reticulum, peroxisome 79.34 86.0
Bra027678.1-P Field mustard cytosol, endoplasmic reticulum, nucleus 79.34 85.66
AT5G41600.1 Thale cress cytosol, nucleus, plasma membrane 71.59 75.49
VIT_02s0025g00640.t01 Wine grape cytosol, nucleus, plasma membrane 64.21 69.05
KRH59988 Soybean mitochondrion 63.47 67.72
KRH41254 Soybean cytosol, nucleus, plasma membrane 63.1 67.32
Os01t0736900-01 Rice plasma membrane 61.62 66.01
VIT_15s0046g01760.t01 Wine grape cytosol, peroxisome, plasma membrane 61.99 65.88
HORVU3Hr1G069970.2 Barley cytosol, nucleus, plasma membrane 61.62 65.49
TraesCS3D01G279100.1 Wheat cytosol, nucleus, plasma membrane 59.78 65.32
TraesCS3A01G278800.1 Wheat golgi 59.41 64.92
TraesCS3B01G313000.1 Wheat cytosol, nucleus, plasma membrane 60.52 64.82
Zm00001d012776_P001 Maize extracellular 59.78 64.03
Zm00001d043551_P003 Maize plasma membrane 60.52 63.81
KXG33320 Sorghum cytosol, nucleus, plasma membrane 60.52 63.57
Os05t0526400-01 Rice plasma membrane 58.67 63.35
TraesCS1D01G349700.1 Wheat cytosol, nucleus, plasma membrane 57.56 62.9
TraesCS1B01G360800.1 Wheat cytosol, nucleus, plasma membrane 57.56 62.65
AT4G23630.2 Thale cress nucleus 63.47 62.55
EES19841 Sorghum cytosol, nucleus, plasma membrane 58.3 61.96
GSMUA_Achr9P05440_001 Banana nucleus, peroxisome, plasma membrane 57.2 61.75
GSMUA_Achr8P27830_001 Banana cytosol, peroxisome, plasma membrane 57.2 61.75
GSMUA_AchrUn_... Banana cytosol, nucleus, plasma membrane 58.67 61.63
AT4G11220.1 Thale cress nucleus 61.25 61.25
Os01t0226300-01 Rice plasma membrane 40.22 61.24
GSMUA_Achr6P31860_001 Banana cytosol, nucleus, plasma membrane 56.83 61.11
Zm00001d038768_P001 Maize extracellular, mitochondrion 56.83 60.63
PGSC0003DMT400032086 Potato cytosol, nucleus, plasma membrane 60.15 60.37
Solyc08g081730.2.1 Tomato endoplasmic reticulum, plastid 59.41 59.63
AT2G46170.1 Thale cress cytosol, nucleus, plasma membrane 55.72 59.22
GSMUA_Achr10P... Banana cytosol, endoplasmic reticulum, plasma membrane 54.98 59.13
GSMUA_Achr4P08400_001 Banana cytosol 54.98 58.89
GSMUA_Achr3P31920_001 Banana cytosol 46.86 57.99
AT3G61560.1 Thale cress cytosol, nucleus, plasma membrane 52.4 56.13
Zm00001d008982_P001 Maize cytosol, nucleus, plasma membrane 57.56 55.91
KXG31516 Sorghum cytosol, nucleus, plasma membrane 57.93 55.28
GSMUA_Achr5P06850_001 Banana cytosol, nucleus, plasma membrane 50.55 54.8
Zm00001d020229_P001 Maize plasma membrane 30.63 54.61
TraesCS3B01G178100.1 Wheat cytosol, nucleus, plasma membrane 57.2 54.2
TraesCS3D01G159100.1 Wheat cytosol, nucleus, plasma membrane 56.83 53.85
Zm00001d020729_P001 Maize plasma membrane 18.82 53.68
Zm00001d039316_P001 Maize cytosol, nucleus, plasma membrane 59.41 52.61
TraesCS1A01G346800.3 Wheat plasma membrane 47.23 50.79
Os02t0265900-01 Rice cytosol, peroxisome, plasma membrane 41.7 49.13
HORVU3Hr1G030760.2 Barley mitochondrion 56.83 49.04
HORVU1Hr1G082010.3 Barley cytosol, nucleus, plasma membrane, plastid 47.23 49.04
TraesCS3A01G151200.1 Wheat cytosol, peroxisome, plasma membrane 56.83 47.83
EER89811 Sorghum peroxisome 44.65 47.27
Zm00001d037453_P001 Maize cytosol, peroxisome, plasma membrane 45.39 47.13
OQU84758 Sorghum cytosol, peroxisome, plasma membrane 39.85 46.55
Zm00001d016041_P001 Maize extracellular 39.48 46.52
TraesCS7B01G241100.1 Wheat cytosol, peroxisome, plasma membrane, plastid 44.28 46.15
TraesCS7A01G341800.1 Wheat cytosol, peroxisome, plasma membrane, plastid 44.28 46.15
TraesCS7D01G337800.1 Wheat cytosol, peroxisome, plasma membrane, plastid 44.28 46.15
Os06t0503400-01 Rice plasma membrane 45.02 46.04
AT4G01230.2 Thale cress cytosol 41.33 45.9
AT3G18260.1 Thale cress plasma membrane 33.21 40.0
HORVU7Hr1G075700.2 Barley mitochondrion 43.91 39.67
HORVU7Hr1G081290.4 Barley plastid 33.21 38.96
VIT_07s0031g02730.t01 Wine grape golgi, mitochondrion, nucleus, plasma membrane 25.09 37.78
GSMUA_Achr3P15760_001 Banana cytosol 20.66 37.33
AT1G68230.2 Thale cress plasma membrane 28.04 35.35
AT3G10260.3 Thale cress plasma membrane 33.95 34.46
AT2G15280.1 Thale cress plasma membrane 24.35 32.84
AT3G54120.1 Thale cress cytosol, plasma membrane, vacuole 24.35 32.51
AT3G10915.7 Thale cress plasma membrane 25.83 27.89
AT3G19460.3 Thale cress plasma membrane 23.99 27.78
AT2G23640.1 Thale cress cytosol, peroxisome, plasma membrane 18.08 23.79
Protein Annotations
MapMan:13.7.2.1EntrezGene:842713ProteinID:AEE34191.1ArrayExpress:AT1G64090EnsemblPlantsGene:AT1G64090RefSeq:AT1G64090
TAIR:AT1G64090RefSeq:AT1G64090-TAIR-GEnsemblPlants:AT1G64090.2TAIR:AT1G64090.2UniProt:F4I596GO:GO:0003674
GO:GO:0005488GO:GO:0005515GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737
GO:GO:0005783GO:GO:0005789GO:GO:0009506GO:GO:0016020GO:GO:0016021InterPro:IPR003388
RefSeq:NP_001185307.1PFAM:PF02453PO:PO:0000013PO:PO:0000037PO:PO:0000084PO:PO:0000230
PO:PO:0000293PO:PO:0001016PO:PO:0001017PO:PO:0001054PO:PO:0001078PO:PO:0001081
PO:PO:0001185PO:PO:0004507PO:PO:0005052PO:PO:0007064PO:PO:0007095PO:PO:0007098
PO:PO:0007103PO:PO:0007115PO:PO:0007123PO:PO:0007611PO:PO:0007616PO:PO:0008019
PO:PO:0009005PO:PO:0009006PO:PO:0009009PO:PO:0009010PO:PO:0009025PO:PO:0009029
PO:PO:0009030PO:PO:0009031PO:PO:0009032PO:PO:0009046PO:PO:0009047PO:PO:0009052
PO:PO:0020030PO:PO:0020038PO:PO:0020100PO:PO:0020137PO:PO:0025022PO:PO:0025195
PO:PO:0025281PFscan:PS50845PANTHER:PTHR10994PANTHER:PTHR10994:SF70Symbol:RTNLB3InterPro:Reticulon
TMHMM:TMhelixUniParc:UPI0001E92B5DSEG:seg:::
Description
RTNLB3Reticulon-like protein [Source:UniProtKB/TrEMBL;Acc:F4I596]
Coordinates
chr1:+:23789062..23791186
Molecular Weight (calculated)
30530.1 Da
IEP (calculated)
7.871
GRAVY (calculated)
0.013
Length
271 amino acids
Sequence
(BLAST)
001: MAEEHKHEES IMEKISEKIH GHDDSSSSSS DSDDDKNSAS LKTKIYRLFG REQPLHKLFG GGKHSENQDI NERFGLVFAA ADIFLWRNKK VSGGVLGAAT
101: VSWILFELLE YNLLTLFGHI SILALAVLFL WSSASTFIHK SPLHIPEVHI PEDVVLQLAS GLRIEINRGF TVLRDIASGR DLKKFLLVIA GLWVLSKVGS
201: SCNFLTLIYI ATVLLFTIPV LYEKYEDKVD DFGEKAMREI KKQYVEFDVK VLSKVMSKIP KGAFAFIKKK D
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.