Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 2
- golgi 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER90788 | Sorghum | cytosol, nucleus, plasma membrane | 95.97 | 96.36 |
| Os03t0781700-01 | Rice | cytosol, peroxisome, plasma membrane | 87.9 | 88.26 |
| TraesCS5B01G420300.1 | Wheat | cytosol, nucleus, plasma membrane | 81.45 | 77.99 |
| HORVU5Hr1G101680.2 | Barley | cytosol, endoplasmic reticulum, peroxisome | 81.85 | 77.78 |
| TraesCS5D01G426200.1 | Wheat | cytosol, peroxisome, plasma membrane | 81.05 | 77.61 |
| TraesCS5A01G418200.1 | Wheat | cytosol, peroxisome, plasma membrane | 81.05 | 77.01 |
| Zm00001d018781_P001 | Maize | extracellular, mitochondrion | 62.1 | 63.37 |
| GSMUA_Achr6P04560_001 | Banana | cytosol, peroxisome, plasma membrane | 62.9 | 62.9 |
| GSMUA_Achr9P10200_001 | Banana | cytosol, peroxisome, plasma membrane | 60.89 | 62.4 |
| KRH14529 | Soybean | cytosol, peroxisome, plasma membrane | 60.48 | 61.22 |
| VIT_12s0028g01090.t01 | Wine grape | cytosol, peroxisome, plasma membrane | 60.08 | 60.08 |
| KRH45979 | Soybean | cytosol, nucleus, plasma membrane | 58.06 | 59.26 |
| KRH73588 | Soybean | plasma membrane | 58.06 | 58.78 |
| PGSC0003DMT400002449 | Potato | cytosol, nucleus, plasma membrane | 56.45 | 55.12 |
| Solyc12g006290.1.1 | Tomato | nucleus | 51.21 | 54.51 |
| Solyc07g044880.2.1 | Tomato | mitochondrion | 31.05 | 54.23 |
| KRG99024 | Soybean | plasma membrane | 57.66 | 54.17 |
| Bra029827.1-P | Field mustard | plasma membrane | 50.4 | 52.3 |
| CDY08616 | Canola | plasma membrane | 50.4 | 52.3 |
| CDY00916 | Canola | plasma membrane | 50.4 | 52.3 |
| AT3G10260.3 | Thale cress | plasma membrane | 52.42 | 48.69 |
| PGSC0003DMT400074138 | Potato | plasma membrane | 53.23 | 44.0 |
| Zm00001d012776_P001 | Maize | extracellular | 42.34 | 41.5 |
| Zm00001d038768_P001 | Maize | extracellular, mitochondrion | 42.34 | 41.34 |
| Zm00001d043551_P003 | Maize | plasma membrane | 42.74 | 41.25 |
| Zm00001d020729_P001 | Maize | plasma membrane | 15.32 | 40.0 |
| CDX82165 | Canola | endoplasmic reticulum, peroxisome, plasma membrane, plastid | 39.52 | 39.52 |
| Zm00001d008982_P001 | Maize | cytosol, nucleus, plasma membrane | 43.55 | 38.71 |
| Zm00001d016041_P001 | Maize | extracellular | 35.48 | 38.26 |
| Zm00001d037848_P008 | Maize | endoplasmic reticulum, nucleus, peroxisome | 37.1 | 36.51 |
| CDY56712 | Canola | mitochondrion | 51.61 | 36.06 |
| Zm00001d038910_P001 | Maize | plasma membrane | 32.26 | 35.24 |
| Zm00001d039316_P001 | Maize | cytosol, nucleus, plasma membrane | 43.15 | 34.97 |
| Zm00001d037453_P001 | Maize | cytosol, peroxisome, plasma membrane | 35.48 | 33.72 |
| Zm00001d020229_P001 | Maize | plasma membrane | 20.16 | 32.89 |
| Zm00001d026575_P001 | Maize | mitochondrion, peroxisome, plasma membrane, plastid, vacuole | 26.21 | 32.83 |
| Zm00001d008590_P001 | Maize | plastid | 17.34 | 32.33 |
| Zm00001d001901_P002 | Maize | plasma membrane | 25.81 | 32.32 |
| Zm00001d011631_P001 | Maize | golgi, peroxisome, plasma membrane | 27.82 | 31.22 |
| Zm00001d047517_P001 | Maize | peroxisome | 25.0 | 27.19 |
| Zm00001d042846_P001 | Maize | plasma membrane | 21.37 | 25.24 |
| Zm00001d039213_P001 | Maize | golgi, plasma membrane, plastid | 18.15 | 19.23 |
Protein Annotations
| EntrezGene:100217189 | MapMan:13.7.2.1 | UniProt:B4FLV0 | EMBL:BT038088 | EMBL:BT061553 | EMBL:BT087510 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005783 | GO:GO:0005789 |
| GO:GO:0016020 | GO:GO:0016021 | InterPro:IPR003388 | ProteinID:ONM09946.1 | ProteinID:ONM09947.1 | PFAM:PF02453 |
| PFscan:PS50845 | PANTHER:PTHR10994 | PANTHER:PTHR10994:SF62 | InterPro:Reticulon | TMHMM:TMhelix | UniParc:UPI00001AB92C |
| EnsemblPlantsGene:Zm00001d034313 | EnsemblPlants:Zm00001d034313_P001 | EnsemblPlants:Zm00001d034313_T001 | : | : | : |
Description
Reticulon-like protein B8
Coordinates
chr1:-:288967922..288970418
Molecular Weight (calculated)
27730.8 Da
IEP (calculated)
8.870
GRAVY (calculated)
0.163
Length
248 amino acids
Sequence
(BLAST)
(BLAST)
001: MSERSESATE KIMSSIMDTI ADNLPKQKSG KFDPGSVSDK VKNKLFGRQK TLHGVLGGGK PADVLLWRNK KISSSVLALA TAIWVFFEWL DYHFLTIVSF
101: ALVLGMVVQF VWSNFSNMLS SGSRSQVPRV ELPDELFVNI AVAIGAQVNK FLCFLQDVSC ERNLKHFVVA IAGLWAAAVI GSWCNFLTVI YVGFVCVHTL
201: PVLYEKYEDQ VDDFLYSLLG LLRDQYQKLD HGVLSKIPKG NMKAKKNE
101: ALVLGMVVQF VWSNFSNMLS SGSRSQVPRV ELPDELFVNI AVAIGAQVNK FLCFLQDVSC ERNLKHFVVA IAGLWAAAVI GSWCNFLTVI YVGFVCVHTL
201: PVLYEKYEDQ VDDFLYSLLG LLRDQYQKLD HGVLSKIPKG NMKAKKNE
001: MPDKNIVEDV IGDLVDNFTE TVQKNKHGSS FFEQEDSVSS RFNRLFDRQK PIHHVLGGGK SADVLLWRNK KISASVLMGA TAIWVLFEWI NFHFLSLVCY
101: ALLLGMIAQF VWSNASGFLN RSQSRVPRLV LPKDFFAEVG VAVGKEVNRG LLFLQDLACK GNLKQFLMAV IGLWVAAMVG SCCNFLTVLY IGFVGAHTMP
201: VLYERYEDEV DGFMDSMIMK FHSHYKKLDT GFLSRIPSGK FGLKKRE
101: ALLLGMIAQF VWSNASGFLN RSQSRVPRLV LPKDFFAEVG VAVGKEVNRG LLFLQDLACK GNLKQFLMAV IGLWVAAMVG SCCNFLTVLY IGFVGAHTMP
201: VLYERYEDEV DGFMDSMIMK FHSHYKKLDT GFLSRIPSGK FGLKKRE
Arabidopsis Description
Reticulon family protein [Source:TAIR;Acc:AT3G10260]
SUBAcon: [peroxisome,cytosol,plasma membrane]
SUBAcon: [peroxisome,cytosol,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.