Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- peroxisome 1
- plastid 1
- plasma membrane 3
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| plastid:
22908117
unclear: 26455813 nucleus: 28394025 |
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
msms PMID:
22908117
doi
Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.
msms PMID:
26455813
doi
Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400074138 | Potato | plasma membrane | 96.14 | 74.67 |
| Solyc07g044880.2.1 | Tomato | mitochondrion | 41.63 | 68.31 |
| VIT_12s0028g01090.t01 | Wine grape | cytosol, peroxisome, plasma membrane | 64.81 | 60.89 |
| KRH14529 | Soybean | cytosol, peroxisome, plasma membrane | 63.95 | 60.82 |
| KRH45979 | Soybean | cytosol, nucleus, plasma membrane | 62.66 | 60.08 |
| KRH73588 | Soybean | plasma membrane | 62.66 | 59.59 |
| CDY00916 | Canola | plasma membrane | 60.52 | 59.0 |
| Bra029827.1-P | Field mustard | plasma membrane | 59.66 | 58.16 |
| CDY08616 | Canola | plasma membrane | 59.66 | 58.16 |
| KRG99024 | Soybean | plasma membrane | 63.95 | 56.44 |
| AT3G10260.3 | Thale cress | plasma membrane | 63.09 | 55.06 |
| GSMUA_Achr9P10200_001 | Banana | cytosol, peroxisome, plasma membrane | 55.36 | 53.31 |
| GSMUA_Achr6P04560_001 | Banana | cytosol, peroxisome, plasma membrane | 56.65 | 53.23 |
| Os03t0781700-01 | Rice | cytosol, peroxisome, plasma membrane | 55.36 | 52.23 |
| EER90788 | Sorghum | cytosol, nucleus, plasma membrane | 54.94 | 51.82 |
| Zm00001d034313_P001 | Maize | cytosol, nucleus, plasma membrane | 54.51 | 51.21 |
| Os07t0142000-01 | Rice | plasma membrane | 51.93 | 49.19 |
| TraesCS5D01G426200.1 | Wheat | cytosol, peroxisome, plasma membrane | 54.51 | 49.03 |
| TraesCS5A01G418200.1 | Wheat | cytosol, peroxisome, plasma membrane | 54.51 | 48.66 |
| TraesCS5B01G420300.1 | Wheat | cytosol, nucleus, plasma membrane | 54.08 | 48.65 |
| HORVU5Hr1G101680.2 | Barley | cytosol, endoplasmic reticulum, peroxisome | 54.08 | 48.28 |
| Zm00001d018781_P001 | Maize | extracellular, mitochondrion | 48.93 | 46.91 |
| TraesCS2D01G254800.1 | Wheat | cytosol, peroxisome, vacuole | 48.93 | 46.15 |
| TraesCS2A01G254300.1 | Wheat | cytosol, peroxisome, vacuole | 48.93 | 46.15 |
| TraesCS2B01G267800.2 | Wheat | cytosol, peroxisome, vacuole | 48.5 | 45.75 |
| CDX82165 | Canola | endoplasmic reticulum, peroxisome, plasma membrane, plastid | 45.92 | 43.15 |
| CDY56712 | Canola | mitochondrion | 62.23 | 40.85 |
| Solyc08g081730.2.1 | Tomato | endoplasmic reticulum, plastid | 46.35 | 40.0 |
| Solyc06g036430.2.1 | Tomato | cytosol, nucleus, plasma membrane | 43.35 | 39.92 |
| Solyc03g007740.2.1 | Tomato | nucleus | 43.35 | 39.61 |
| Solyc10g011870.2.1 | Tomato | cytosol, nucleus, plasma membrane | 44.21 | 39.16 |
| KXG34376 | Sorghum | plasma membrane | 51.93 | 38.53 |
| Solyc01g095200.2.1 | Tomato | plastid | 42.49 | 37.64 |
| Solyc09g055250.2.1 | Tomato | cytosol, endoplasmic reticulum, peroxisome | 37.77 | 36.07 |
| Solyc06g082740.2.1 | Tomato | nucleus | 35.19 | 35.81 |
| Solyc06g049060.2.1 | Tomato | mitochondrion, plasma membrane | 28.33 | 34.74 |
| Solyc03g119190.2.1 | Tomato | plasma membrane | 30.9 | 32.88 |
| Solyc09g013110.2.1 | Tomato | cytosol, plasma membrane, vacuole | 28.76 | 32.06 |
| Solyc05g008890.2.1 | Tomato | plasma membrane | 30.04 | 31.67 |
| Solyc01g107620.2.1 | Tomato | plasma membrane | 29.61 | 31.51 |
| HORVU2Hr1G060770.16 | Barley | plasma membrane | 48.93 | 29.77 |
| Solyc02g090370.2.1 | Tomato | plasma membrane | 15.45 | 19.25 |
Protein Annotations
| EnsemblPlants:Solyc12g006290.1.1 | EnsemblPlantsGene:Solyc12g006290.1 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005783 | GO:GO:0005789 | GO:GO:0016020 | GO:GO:0016021 | InterPro:IPR003388 | InterPro:Reticulon |
| PANTHER:PTHR10994 | PANTHER:PTHR10994:SF62 | PFAM:PF02453 | PFscan:PS50845 | SEG:seg | TMHMM:TMhelix |
| UniParc:UPI000276A7B5 | UniProt:K4DBG6 | MapMan:13.7.2.1 | : | : | : |
Description
Reticulon-like protein [Source:UniProtKB/TrEMBL;Acc:K4DBG6]
Coordinates
chr12:-:801938..804732
Molecular Weight (calculated)
25890.5 Da
IEP (calculated)
9.110
GRAVY (calculated)
0.164
Length
233 amino acids
Sequence
(BLAST)
(BLAST)
001: MDSISEGELK HKATSFFQDE SESSVSAQFN RLFGRQKPIH HCLGGGKSAD SMLWRNKKIS AGVLISATAI WVLFEWLNYN FLSLLCFGLS FGLIAQFLLK
101: NASGVINRSP TVPRLVLPED LFINIAKRIG TELNHGLGFL QDAALGGNLK QFVVVILSLW AAGMIGTWCN FLTVLYIGFI AAHTLPVLYE RYEDEVDGFV
201: YSALDKLQGH YKKLDSGVLS RLPRGSFRGK KVE
101: NASGVINRSP TVPRLVLPED LFINIAKRIG TELNHGLGFL QDAALGGNLK QFVVVILSLW AAGMIGTWCN FLTVLYIGFI AAHTLPVLYE RYEDEVDGFV
201: YSALDKLQGH YKKLDSGVLS RLPRGSFRGK KVE
001: MKSTFICKLS NLRFRLCFRI MPDKNIVEDV IGDLVDNFTE TVQKNKHGSS FFEQEDSVSS RFNRLFDRQK PIHHVLGGGK SADVLLWRNK KISASVLMGA
101: TAIWVLFEWI NFHFLSLVCY ALLLGMIAQF VWSNASGFLN RSQSRVPRLV LPKDFFAEVG VAVGKEVNRG LLFLQDLACK GNLKQFLMAV IGLWVAAMVG
201: SCCNFLTVLY IGFVGAHTMP VLYERYEDEV DGFMDSMIMK FHSHYKKLDT GFLSRIPSGK FGLKKRE
101: TAIWVLFEWI NFHFLSLVCY ALLLGMIAQF VWSNASGFLN RSQSRVPRLV LPKDFFAEVG VAVGKEVNRG LLFLQDLACK GNLKQFLMAV IGLWVAAMVG
201: SCCNFLTVLY IGFVGAHTMP VLYERYEDEV DGFMDSMIMK FHSHYKKLDT GFLSRIPSGK FGLKKRE
Arabidopsis Description
Reticulon family protein [Source:TAIR;Acc:AT3G10260]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.