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Sorghum
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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • nucleus 1
  • plastid 5
  • cytosol 1
  • plasma membrane 3
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • golgi 1
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:cytosol, nucleus, plastid, secretory
BaCelLo:nucleus
ChloroP:plastid
iPSORT:plastid
MultiLoc:cytosol
Plant-mPloc:plasma membrane
Predotar:plastid
PProwler:secretory
TargetP:plastid
WoLF PSORT:plastid
YLoc:plasma membrane
PPI

Inferred distinct locusB in Crop

locusBlocations
EER87703
EER89811
EER93195
EES03822
EES15518
EES19450
EES19652
EES19841
KXG22202
KXG31516
KXG33320
KXG38626
OQU79263
OQU82692
OQU84758
OQU88745
OQU92576

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT2G38360.1 EER93195 AT3G46060.1 21798944
AT2G38360.1 EES19652 AT3G46060.1 21798944
AT2G38360.1 OQU88745 AT3G46060.1 21798944
AT5G01640.1 EER87703 AT4G25660.1 21798944
AT5G01640.1 EES03822 AT5G01640.1 21798944
AT5G01640.1 EES15518 AT5G01640.1 21798944
AT5G01640.1 KXG22202 AT5G01640.1 21798944
AT5G01640.1 KXG38626 AT5G01640.1 21798944
AT5G01640.1 OQU79263 AT5G01640.1 21798944
AT5G01640.1 OQU82692 AT5G01640.1 21798944
AT5G01640.1 EES19450 AT5G12390.1 21798944
AT5G01640.1 OQU92576 AT5G12390.1 21798944
AT5G01640.1 EER89811 AT5G41600.1 21798944
AT5G01640.1 EES19841 AT5G41600.1 21798944
AT5G01640.1 KXG31516 AT5G41600.1 21798944
AT5G01640.1 KXG33320 AT5G41600.1 21798944
AT5G01640.1 OQU84758 AT5G41600.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d010603_P002 Maize mitochondrion 94.93 94.93
Os05t0474400-01 Rice plasma membrane, vacuole 89.86 88.64
TraesCS1B01G307400.1 Wheat golgi, unclear 84.33 83.18
TraesCS1A01G297900.1 Wheat plastid 84.33 82.81
HORVU1Hr1G070360.1 Barley plastid 84.33 82.43
TraesCS1D01G293300.1 Wheat plastid 83.87 82.35
EES03822 Sorghum plastid 76.96 74.89
GSMUA_Achr3P10010_001 Banana plastid 61.29 61.57
GSMUA_Achr5P07440_001 Banana plastid 60.83 61.4
OQU82692 Sorghum plastid 58.99 57.14
EES15518 Sorghum plastid 59.91 55.79
KRG93818 Soybean extracellular, plasma membrane, vacuole 20.74 53.57
CDY63156 Canola plastid 53.46 53.21
Bra000056.1-P Field mustard plastid 54.38 53.15
CDY07736 Canola plastid 54.38 53.15
KRH76033 Soybean endoplasmic reticulum 53.0 52.51
AT2G38360.1 Thale cress plastid 53.0 52.27
KRH49465 Soybean plastid 52.53 51.12
CDX80758 Canola plastid 50.23 50.93
KRH00333 Soybean plastid 52.53 50.22
KRH65569 Soybean plastid 52.53 50.22
Solyc10g076360.1.1 Tomato plastid 51.15 49.55
PGSC0003DMT400034320 Potato plastid 48.39 49.53
PGSC0003DMT400041063 Potato plastid 51.61 49.12
AT5G01640.1 Thale cress plastid 49.77 48.43
KXG38626 Sorghum golgi, plasma membrane, plastid 40.09 47.03
CDY61529 Canola plastid 27.19 46.83
AT4G00005.1 Thale cress extracellular, plasma membrane 24.42 44.92
Bra005112.1-P Field mustard plastid 34.56 44.64
KRH32827 Soybean plastid 44.24 42.48
CDY54457 Canola endoplasmic reticulum, peroxisome, plasma membrane 35.02 41.76
OQU79263 Sorghum plastid 30.88 40.61
EES00126 Sorghum plastid 30.88 34.9
OQU77594 Sorghum plastid 30.41 33.67
EER90731 Sorghum plastid 31.34 30.36
EER93477 Sorghum plastid 36.87 27.21
Protein Annotations
EnsemblPlants:KXG22202EnsemblPlantsGene:SORBI_3009G171100GO:GO:0005575GO:GO:0006810GO:GO:0008150GO:GO:0016020
GO:GO:0016021InterPro:Prenylated_rab_accept_PRA1PANTHER:PTHR19317PANTHER:PTHR19317:SF12PFAM:PF03208ProteinID:KXG22202
ProteinID:KXG22202.1SEG:segTMHMM:TMhelixUniParc:UPI0001FCC37EUniProt:A0A1B6P993MapMan:22.8.4.3.2
Description
hypothetical protein
Coordinates
chr9:+:52666081..52667327
Molecular Weight (calculated)
22693.4 Da
IEP (calculated)
9.203
GRAVY (calculated)
0.462
Length
217 amino acids
Sequence
(BLAST)
001: MASAPTPPPL LPVTNPAPGS SPATTGGSDA PIATPAFRLF LSRLSDSARR SLSDRRPWGE LLDRSAFSKP DSVSDATSRL RRNLAYFRVN YAAVVAFALG
101: ASLLAHPFSL LILLGLLAAW CFLYLFRASD QPVVLFGRTF SDRETLLGLV GASFVLLFFT SVASLIISGL LVGGALVAAH GAFRVPEDLF LDEPNAATGN
201: SAAQGLLSFL GAPGSGV
Best Arabidopsis Sequence Match ( AT2G38360.1 )
(BLAST)
001: MASSAPPVLP ISNPQTVPSA APSSVESQPP IATPAFRNFI NQITETVKNG LSKRRPWAEL ADRSALSKPE SISDAAVRIR KNYSYFKVNY LTVATAIVGF
101: SLVTHPFSLV FLLCLLASWL FLYLFRPTDQ PIVLFGRTFS DRETLGCLIL FSIFVIFLTD VGSVLVSAMM IGVALICAHG AFRAPEDLFL DEQEPAATGF
201: LSFLGGAASS AAPAVIAARV
Arabidopsis Description
PRA1B4PRA1 family protein B4 [Source:UniProtKB/Swiss-Prot;Acc:O80915]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.