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Rice
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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane, vacuole

Predictor Summary:
  • nucleus 1
  • plastid 6
  • peroxisome 1
  • plasma membrane 1
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane, vacuole
Any Predictor:nucleus, peroxisome, plasma membrane, plastid
BaCelLo:nucleus
iPSORT:plastid
MultiLoc:peroxisome
Plant-mPloc:plasma membrane
Predotar:plastid
PProwler:plastid
TargetP:plastid
WoLF PSORT:plastid
YLoc:plastid
 vacuole: 20632185
plasma membrane: 28056797
gfp PMID: 20632185 doi
JB Heo, WY Bang, SW Kim, SM Hwang, YS Son, CH Im, BR Acharya, CW Kim, SW Kim, BH Lee, JD Bahk
Department of Biology, Pennsylvania State University, University Park, PA 16802, USA.
msms PMID: 28056797 doi
N Yang, T Wang
Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China., Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China. twang@ibcas.ac.cn.
PPI

Inferred distinct locusB in Crop

locusBlocations
Os01t0226300-01
Os01t0736900-01
Os01t0827400-01
Os01t0951800-01
Os02t0265900-01
Os03t0356484-01
Os03t0819900-01
Os05t0383000-01
Os05t0461300-01
Os05t0474400-01
Os05t0526400-01
Os06t0107000-01
Os06t0503400-01
Os07t0239400-01
Os11t0107600-01
Os12t0107600-00

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT2G38360.1 Os03t0819900-01 AT3G46060.1 21798944
AT2G38360.1 Os05t0461300-01 AT3G46060.1 21798944
AT2G38360.1 Os07t0239400-01 AT3G46060.1 21798944
AT5G01640.1 Os06t0107000-01 AT4G25660.1 21798944
AT5G01640.1 Os01t0827400-01 AT5G01640.1 21798944
AT5G01640.1 Os05t0474400-01 AT5G01640.1 21798944
AT5G01640.1 Os11t0107600-01 AT5G01640.1 21798944
AT5G01640.1 Os12t0107600-00 AT5G01640.1 21798944
AT5G01640.1 Os01t0951800-01 AT5G12390.1 21798944
AT5G01640.1 Os03t0356484-01 AT5G12390.1 21798944
AT5G01640.1 Os05t0383000-01 AT5G12390.1 21798944
AT5G01640.1 Os01t0226300-01 AT5G41600.1 21798944
AT5G01640.1 Os01t0736900-01 AT5G41600.1 21798944
AT5G01640.1 Os02t0265900-01 AT5G41600.1 21798944
AT5G01640.1 Os05t0526400-01 AT5G41600.1 21798944
AT5G01640.1 Os06t0503400-01 AT5G41600.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KXG22202 Sorghum plastid 88.64 89.86
Zm00001d010603_P002 Maize mitochondrion 86.82 88.02
TraesCS1A01G297900.1 Wheat plastid 87.73 87.33
TraesCS1B01G307400.1 Wheat golgi, unclear 87.27 87.27
TraesCS1D01G293300.1 Wheat plastid 87.27 86.88
HORVU1Hr1G070360.1 Barley plastid 85.91 85.14
Os01t0827400-01 Rice extracellular, mitochondrion, plasma membrane 53.18 80.69
GSMUA_Achr5P07440_001 Banana plastid 61.36 62.79
GSMUA_Achr3P10010_001 Banana plastid 60.91 62.04
Os11t0107600-01 Rice plastid 57.73 57.73
Os12t0107600-00 Rice plastid 56.82 56.82
KRH76033 Soybean endoplasmic reticulum 52.27 52.51
KRG93818 Soybean extracellular, plasma membrane, vacuole 20.0 52.38
CDY63156 Canola plastid 50.0 50.46
Bra000056.1-P Field mustard plastid 50.91 50.45
CDY07736 Canola plastid 50.91 50.45
PGSC0003DMT400034320 Potato plastid 48.18 50.0
AT2G38360.1 Thale cress plastid 50.0 50.0
CDX80758 Canola plastid 48.64 50.0
KRH65569 Soybean plastid 51.36 49.78
Solyc10g076360.1.1 Tomato plastid 49.55 48.66
KRH49465 Soybean plastid 49.09 48.43
PGSC0003DMT400041063 Potato plastid 50.0 48.25
AT5G01640.1 Thale cress plastid 48.64 47.98
KRH00333 Soybean plastid 48.18 46.7
CDY61529 Canola plastid 26.36 46.03
AT4G00005.1 Thale cress extracellular, plasma membrane 24.55 45.76
KRH32827 Soybean plastid 44.55 43.36
Bra005112.1-P Field mustard plastid 32.73 42.86
CDY54457 Canola endoplasmic reticulum, peroxisome, plasma membrane 33.18 40.11
Os05t0200280-01 Rice plasma membrane 29.55 33.68
Os01t0196500-01 Rice plastid 30.0 32.84
Os03t0798400-01 Rice plasma membrane 31.36 30.0
Os03t0741600-00 Rice nucleus 34.09 22.06
Protein Annotations
EMBL:AK060006EMBL:AK104118EnsemblPlants:Os05t0474400-01EnsemblPlantsGene:Os05g0474400EntrezGene:4339088GO:GO:0005575
GO:GO:0016020GO:GO:0016021InterPro:Prenylated_rab_accept_PRA1PANTHER:PTHR19317PANTHER:PTHR19317:SF12PFAM:PF03208
ProteinID:AAU44242.1ProteinID:BAF17738.1ProteinID:BAS94515.1RefSeq:XP_015639341.1SEG:segTMHMM:TMhelix
UniParc:UPI000043F4CCUniProt:Q65WW5MapMan:22.8.4.3.2:::
Description
Prenylated rab acceptorPrenylated rab acceptor PRA1 family protein. (Os05t0474400-01);Non-protein coding transcript. (Os05t0474400-03)
Coordinates
chr5:+:23284633..23285729
Molecular Weight (calculated)
23020.7 Da
IEP (calculated)
8.753
GRAVY (calculated)
0.509
Length
220 amino acids
Sequence
(BLAST)
001: MASSAPTPPP LLPVTNPAAA GSSPAATAVG SDAPIATPAF RLFLSKLSDS ARRSLSDRRP WTELVDRSAF SRPDSLSDAT SRLRRNLAYF RVNYAAVVAF
101: ALGASLLAHP FSLLVLLGLL AAWCFLYLFR GSDQPVVLFG RTFSDRETLL GLVVASFVAF FFTSVASLII SGLLVGGAIV AVHGACRMPE DLFLDDADAA
201: SGNSAAQGLL SFLGAPGSRV
Best Arabidopsis Sequence Match ( AT3G56110.4 )
(BLAST)
001: MATPPTLPVT NQQAVQSQPP INTPAFRTFF SRLSTSIRDG LSQRRPWTEL IDRSSMARPE SLTDALSRIR KNLAYFKVNY VAIVSLVLAF SLFSHPLSLL
101: VLIGLLGGWM FLYLFRPSDQ PLVVFGRTFS DRETLLALVL STIVVVFMTS VGSLLTSALM IGVAIVCVHG AFVVPDDLFL DEQEPANAGL LSFLGGSATS
201: AAAAVSGRV
Arabidopsis Description
PRA1B1PRA1 family protein [Source:UniProtKB/TrEMBL;Acc:A0A178VNJ7]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.