Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- endoplasmic reticulum 5
- extracellular 3
- vacuole 3
- plasma membrane 3
- golgi 3
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
plasma membrane:
29385242
|
msms PMID:
29385242
doi
Biosystems Engineering, Fraunhofer Institute for Factory Operation and Automation, Joseph-von-Fraunhofer-Straße 1, 39106, Magdeburg, Germany., Institute of Biology/Applied Genetics, Dahlem Centre of Plant Sciences, Free University of Berlin, Albrecht-Thaer-Weg 6, 14195, Berlin, Germany., Leibniz Institute of Plant Genetics and Crop Plant Research, Corrensstraße 3, 06466, Stadt Seeland, Gatersleben, Germany., Leibniz Institute of Vegetable and Ornamental Crops, Theodor-Echtermeyer-Weg 1, 14979, Großbeeren, Germany., Technical University of Denmark, Søltofts Plads, Building 224, 2800, Kongens Lyngby, Denmark.
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3A01G172900.1 | Wheat | golgi | 100.0 | 100.0 |
| TraesCS3B01G203800.1 | Wheat | endoplasmic reticulum | 100.0 | 100.0 |
| TraesCS3D01G179300.1 | Wheat | endoplasmic reticulum, extracellular | 100.0 | 96.02 |
| EES02699 | Sorghum | endoplasmic reticulum, extracellular | 94.82 | 94.82 |
| Os01t0254000-01 | Rice | plasma membrane | 94.82 | 94.82 |
| Zm00001d040278_P001 | Maize | extracellular | 94.82 | 94.82 |
| Bra000895.1-P | Field mustard | endoplasmic reticulum, extracellular | 91.71 | 91.71 |
| AT4G02080.1 | Thale cress | endoplasmic reticulum | 91.71 | 91.71 |
| VIT_07s0005g01330.t01 | Wine grape | endoplasmic reticulum, extracellular | 91.71 | 91.71 |
| CDX90955 | Canola | endoplasmic reticulum, extracellular | 91.71 | 91.71 |
| KRH68446 | Soybean | endoplasmic reticulum | 91.71 | 91.71 |
| CDY22027 | Canola | endoplasmic reticulum, extracellular | 91.71 | 91.71 |
| VIT_05s0077g01230.t01 | Wine grape | endoplasmic reticulum, extracellular | 91.19 | 91.19 |
| CDX91807 | Canola | endoplasmic reticulum, extracellular | 91.19 | 91.19 |
| KRH33832 | Soybean | endoplasmic reticulum | 90.67 | 90.67 |
| KRG92955 | Soybean | endoplasmic reticulum, extracellular | 90.67 | 90.67 |
| KRG96730 | Soybean | endoplasmic reticulum | 90.67 | 90.67 |
| PGSC0003DMT400023327 | Potato | endoplasmic reticulum, extracellular | 90.16 | 90.16 |
| AT3G62560.1 | Thale cress | endoplasmic reticulum | 90.16 | 90.16 |
| KRH37008 | Soybean | endoplasmic reticulum | 90.16 | 90.16 |
| KRH11980 | Soybean | endoplasmic reticulum, extracellular | 90.16 | 90.16 |
| Solyc01g079540.2.1 | Tomato | plastid | 90.16 | 90.16 |
| PGSC0003DMT400007183 | Potato | endoplasmic reticulum, golgi | 89.64 | 89.64 |
| KRH50760 | Soybean | endoplasmic reticulum | 89.64 | 89.64 |
| KRH50759 | Soybean | endoplasmic reticulum | 89.64 | 89.64 |
| Solyc01g100350.2.1 | Tomato | plastid | 89.64 | 89.64 |
| KRH02328 | Soybean | endoplasmic reticulum | 89.64 | 89.64 |
| PGSC0003DMT400068658 | Potato | endoplasmic reticulum, extracellular | 89.12 | 89.12 |
| PGSC0003DMT400018800 | Potato | cytosol | 89.12 | 89.12 |
| KRH02329 | Soybean | endoplasmic reticulum, extracellular | 89.12 | 89.12 |
| Solyc06g009660.2.1 | Tomato | extracellular | 89.12 | 89.12 |
| Solyc01g060130.2.1 | Tomato | endoplasmic reticulum, extracellular | 88.6 | 88.6 |
| AT1G56330.1 | Thale cress | endoplasmic reticulum | 88.6 | 88.6 |
| CDY65544 | Canola | endoplasmic reticulum, extracellular | 86.53 | 87.43 |
| Bra027937.1-P | Field mustard | endoplasmic reticulum, extracellular | 88.08 | 87.18 |
| CDY59269 | Canola | endoplasmic reticulum, extracellular | 88.08 | 87.18 |
| CDY41713 | Canola | endoplasmic reticulum, extracellular | 88.08 | 87.18 |
| CDX95000 | Canola | endoplasmic reticulum, golgi | 87.05 | 87.05 |
| Bra018576.1-P | Field mustard | endoplasmic reticulum, golgi | 87.05 | 87.05 |
| CDY31105 | Canola | endoplasmic reticulum, golgi | 87.05 | 87.05 |
| CDX93520 | Canola | endoplasmic reticulum, golgi | 87.05 | 87.05 |
| CDY39001 | Canola | endoplasmic reticulum, extracellular | 87.56 | 86.67 |
| Bra038169.1-P | Field mustard | endoplasmic reticulum, extracellular | 87.56 | 86.67 |
| CDY32159 | Canola | endoplasmic reticulum, golgi | 86.53 | 86.53 |
| AT1G09180.1 | Thale cress | extracellular | 86.01 | 86.01 |
| VIT_16s0013g00170.t01 | Wine grape | cytosol | 47.15 | 84.26 |
| AT1G02620.1 | Thale cress | endoplasmic reticulum | 49.22 | 77.87 |
| HORVU7Hr1G080190.1 | Barley | endoplasmic reticulum | 77.72 | 77.72 |
| VIT_05s0165g00230.t01 | Wine grape | cytosol | 64.25 | 72.94 |
| HORVU3Hr1G045150.3 | Barley | plastid | 76.68 | 66.37 |
| VIT_14s0060g01340.t01 | Wine grape | endoplasmic reticulum, extracellular | 80.83 | 65.82 |
| VIT_02s0033g01130.t01 | Wine grape | cytosol | 41.97 | 45.51 |
| Bra036294.1-P | Field mustard | endoplasmic reticulum | 91.19 | 43.14 |
| CDY07095 | Canola | endoplasmic reticulum | 91.19 | 43.03 |
| HORVU6Hr1G073370.2 | Barley | cytosol | 31.09 | 32.61 |
| HORVU4Hr1G070410.2 | Barley | cytosol | 32.12 | 25.62 |
Protein Annotations
| MapMan:22.4.2.1 | Gene3D:3.40.50.300 | EMBL:AK368903 | UniProt:F2DYD4 | GO:GO:0000166 | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005525 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005783 | GO:GO:0005794 | GO:GO:0006810 | GO:GO:0006886 | GO:GO:0008150 | GO:GO:0015031 |
| GO:GO:0016192 | EnsemblPlantsGene:HORVU3Hr1G035000 | EnsemblPlants:HORVU3Hr1G035000.2 | InterPro:IPR006687 | InterPro:P-loop_NTPase | PFAM:PF00025 |
| PRINTS:PR00328 | PFscan:PS51422 | PANTHER:PTHR11711 | PANTHER:PTHR11711:SF203 | SMART:SM00177 | SMART:SM00178 |
| SUPFAM:SSF52540 | InterPro:Small_GTP-bd_dom | InterPro:Small_GTPase_ARF/SAR | InterPro:Small_GTPase_SAR1 | TIGRFAMs:TIGR00231 | UniParc:UPI00016EC144 |
| SEG:seg | : | : | : | : | : |
Description
Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2DYD4]
Coordinates
chrchr3H:-:193000902..193008200
Molecular Weight (calculated)
21942.5 Da
IEP (calculated)
6.277
GRAVY (calculated)
-0.145
Length
193 amino acids
Sequence
(BLAST)
(BLAST)
001: MFLVDWFYGV LASLGLWQKE AKILFLGLDN AGKTTLLHML KDERLVQHQP TQYPTSEELS IGQIKFKTFD LGGHQIARRV WKDYYAKVDA VVYLVDAADK
101: ERFAESKKEL DGLLSDDSLA NVPFLVLGNK IDIPIAASEE ELRYYLGLSN FTTGKGNVNL SDSNVRPLEV FMCSIVRKMG YGEGFKWMSQ YIK
101: ERFAESKKEL DGLLSDDSLA NVPFLVLGNK IDIPIAASEE ELRYYLGLSN FTTGKGNVNL SDSNVRPLEV FMCSIVRKMG YGEGFKWMSQ YIK
001: MFMIDWFYGV LASLGLWQKE AKILFLGLDN AGKTTLLHML KDERLVQHQP TQHPTSEELS IGKIKFKAFD LGGHQIARRV WKDYYAKVDA VVYLVDAYDK
101: ERFAESKKEL DALLSDESLA SVPFLILGNK IDIPYAASED ELRYHLGLSN FTTGKGKVNL TDSNVRPLEV FMCSIVRKMG YGEGFKWVSQ YIK
101: ERFAESKKEL DALLSDESLA SVPFLILGNK IDIPYAASED ELRYHLGLSN FTTGKGKVNL TDSNVRPLEV FMCSIVRKMG YGEGFKWVSQ YIK
Arabidopsis Description
SAR1ASAR2 [Source:UniProtKB/TrEMBL;Acc:A0A178V5S8]
SUBAcon: [endoplasmic reticulum]
SUBAcon: [endoplasmic reticulum]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.