CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, endoplasmic reticulum, vacuole, cytosol, plasma membrane, golgi

Predictor Summary:

nucleus 2
cytosol 2
extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, secretory
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY08727	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	99.46	99.46
CDY18665	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	98.37	98.37
CDY43583	Canola	cytosol	40.22	97.37
CDX81307	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	97.28	97.28
AT5G67560.1	Thale cress	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	95.65	95.65
CDY02106	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	93.48	93.48
CDY23031	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	93.48	93.48
VIT_00s0601g00030.t01	Wine grape	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	91.85	91.85
Solyc02g064640.2.1	Tomato	extracellular	91.3	91.3
PGSC0003DMT400008577	Potato	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	91.3	91.3
KRH58117	Soybean	endoplasmic reticulum	90.76	90.76
KRH28350	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	90.76	90.76
Solyc02g092330.2.1	Tomato	plastid	90.22	90.22
KRH77133	Soybean	endoplasmic reticulum	90.22	90.22
PGSC0003DMT400055238	Potato	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	89.67	89.67
GSMUA_Achr8P30960_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	89.67	89.67
PGSC0003DMT400023482	Potato	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	88.59	88.59
Solyc03g043960.2.1	Tomato	plastid	88.04	88.04
GSMUA_AchrUn_...	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	87.5	87.5
GSMUA_Achr1P22490_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	84.78	84.78
TraesCS4A01G045000.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	83.7	83.7
TraesCS4D01G260100.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	83.7	83.7
TraesCS4B01G260300.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	83.7	83.7
Os03t0200800-01	Rice	plasma membrane	83.15	83.15
EER92687	Sorghum	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	83.15	83.15
Zm00001d048155_P001	Maize	extracellular	81.52	81.52
Zm00001d028112_P001	Maize	extracellular	79.89	79.89
CDY06369	Canola	cytosol	70.65	71.43
HORVU4Hr1G070410.2	Barley	cytosol	83.7	63.64
CDY37846	Canola	cytosol, mitochondrion, nucleus, plastid	43.48	62.5
CDX68554	Canola	cytosol	42.93	61.24
CDY01716	Canola	cytosol	69.57	56.89
CDY01715	Canola	cytosol	69.57	56.89
CDX74569	Canola	cytosol	69.57	56.64
CDX91807	Canola	endoplasmic reticulum, extracellular	34.78	33.16
CDX90955	Canola	endoplasmic reticulum, extracellular	34.24	32.64
CDY22027	Canola	endoplasmic reticulum, extracellular	34.24	32.64
CDY65544	Canola	endoplasmic reticulum, extracellular	33.7	32.46
CDY32159	Canola	endoplasmic reticulum, golgi	33.7	32.12
CDY59269	Canola	endoplasmic reticulum, extracellular	33.7	31.79
CDY39001	Canola	endoplasmic reticulum, extracellular	33.7	31.79
CDY41713	Canola	endoplasmic reticulum, extracellular	33.7	31.79
CDX95000	Canola	endoplasmic reticulum, golgi	33.15	31.61
CDX93520	Canola	endoplasmic reticulum, golgi	33.15	31.61
CDY31105	Canola	endoplasmic reticulum, golgi	33.15	31.61
CDY07095	Canola	endoplasmic reticulum	33.7	15.16
CDY22028	Canola	nucleus	13.59	12.2

Protein Annotations

MapMan:26.10.2.4	Gene3D:3.40.50.300	GO:A0A078HFC8	UniProt:A0A078HFC8	EnsemblPlants:CDY36501	ProteinID:CDY36501
ProteinID:CDY36501.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0007154	GO:GO:0007165	GO:GO:0007264	GO:GO:0008150
GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00062171001	InterPro:IPR024156	InterPro:P-loop_NTPase	PFAM:PF00025	PRINTS:PR00328
PFscan:PS51417	PANTHER:PTHR11711	PANTHER:PTHR11711:SF231	SMART:SM00175	SMART:SM00177	SMART:SM00178
SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase_ARF	InterPro:Small_GTPase_ARF/SAR	TIGRFAMs:TIGR00231	UniParc:UPI0004EE83D9

Description

BnaC03g48600DBnaC03g48600D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HFC8]

Coordinates

chrLK032377:+:289068..290894

Molecular Weight (calculated)

20440.8 Da

IEP (calculated)

7.292

GRAVY (calculated)

-0.043

Length

184 amino acids

Sequence
(BLAST)

001: MGLWDAFLNW LRSLFFKQEM ELSLIGLQNA GKTSLVNVVA TGGYSEDMIP TVGFNMRKVT KGSVTIKLWD LGGQPRFRSM WERYCRSVSA IVYVVDAADP
101: DNLSVSKSEL HDLLSKTSLS GIPLLVLGNK IDRPGALSKD DLTEEMGLKS LTDREVCCFM ISCKNSTNID QVIDWLVKHS KSAS

Best Arabidopsis Sequence Match ( AT5G67560.1 )
(BLAST)

001: MGLWDALLNW LRSLFFKQEM ELSLIGLQNA GKTSLVNVVA TGGYSEDMIP TVGFNMRKVT KGSVTIKLWD LGGQPRFRSM WERYCRSVSA IVYVVDAADP
101: DNLSVSKSEL HDLLSKTSLN GIPLLVLGNK IDKPGALSKE ALTDEMGLKS LTDREVCCFM ISCKNSTNID QVIDWLVKHS KSSN

Arabidopsis Description

ARL8BADP-ribosylation factor-like protein 8b [Source:UniProtKB/Swiss-Prot;Acc:Q93Y31]
SUBAcon: [extracellular,endoplasmic reticulum,vacuole,cytosol,plasma membrane,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.