Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 2
- extracellular 2
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 2
- golgi 2
- nucleus 1
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G37680.1 | CDX84035 | AT1G14340.1 | 21798944 |
| AT5G37680.1 | CDX96860 | AT1G14340.1 | 21798944 |
| AT5G37680.1 | CDY49093 | AT1G14340.1 | 21798944 |
| AT5G37680.1 | CDY62016 | AT1G14340.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY01716 | Canola | cytosol | 100.0 | 100.0 |
| CDX74569 | Canola | cytosol | 98.22 | 97.79 |
| CDY43583 | Canola | cytosol | 29.78 | 88.16 |
| Bra028142.1-P | Field mustard | cytosol | 71.56 | 87.5 |
| AT5G37680.1 | Thale cress | cytosol | 69.78 | 85.33 |
| KRH17349 | Soybean | cytosol | 67.11 | 82.07 |
| KRH72981 | Soybean | cytosol | 66.67 | 81.52 |
| TraesCS6B01G324400.2 | Wheat | cytosol | 66.22 | 80.98 |
| TraesCS6A01G293900.1 | Wheat | cytosol | 66.22 | 80.98 |
| TraesCS6D01G274800.1 | Wheat | cytosol | 66.22 | 80.98 |
| HORVU6Hr1G073370.2 | Barley | cytosol | 66.22 | 80.98 |
| Solyc11g011040.1.1 | Tomato | plasma membrane | 65.78 | 80.43 |
| EES05578 | Sorghum | cytosol | 65.33 | 79.89 |
| Os02t0732500-01 | Rice | plasma membrane | 64.44 | 78.8 |
| GSMUA_Achr6P23020_001 | Banana | cytosol | 63.56 | 77.72 |
| PGSC0003DMT400040524 | Potato | cytosol, plastid | 56.89 | 77.58 |
| VIT_14s0006g01090.t01 | Wine grape | cytosol | 53.33 | 72.73 |
| CDY02106 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 57.33 | 70.11 |
| CDY08727 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 57.33 | 70.11 |
| CDY23031 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 57.33 | 70.11 |
| CDY36501 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 56.89 | 69.57 |
| CDX81307 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 56.89 | 69.57 |
| CDY18665 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 56.89 | 69.57 |
| Zm00001d000379_P002 | Maize | mitochondrion | 65.33 | 65.04 |
| Zm00001d017945_P002 | Maize | mitochondrion | 54.22 | 62.56 |
| CDX68554 | Canola | cytosol | 31.11 | 54.26 |
| CDY06369 | Canola | cytosol | 43.11 | 53.3 |
| CDY37846 | Canola | cytosol, mitochondrion, nucleus, plastid | 20.44 | 35.94 |
| CDY65544 | Canola | endoplasmic reticulum, extracellular | 24.44 | 28.8 |
| CDX90955 | Canola | endoplasmic reticulum, extracellular | 24.44 | 28.5 |
| CDY22027 | Canola | endoplasmic reticulum, extracellular | 24.44 | 28.5 |
| CDY39001 | Canola | endoplasmic reticulum, extracellular | 24.44 | 28.21 |
| CDY59269 | Canola | endoplasmic reticulum, extracellular | 24.44 | 28.21 |
| CDY41713 | Canola | endoplasmic reticulum, extracellular | 24.44 | 28.21 |
| CDX95000 | Canola | endoplasmic reticulum, golgi | 24.0 | 27.98 |
| CDX93520 | Canola | endoplasmic reticulum, golgi | 24.0 | 27.98 |
| CDX91807 | Canola | endoplasmic reticulum, extracellular | 24.0 | 27.98 |
| CDY31105 | Canola | endoplasmic reticulum, golgi | 24.0 | 27.98 |
| CDY32159 | Canola | endoplasmic reticulum, golgi | 24.0 | 27.98 |
| CDY07095 | Canola | endoplasmic reticulum | 24.44 | 13.45 |
| CDY22028 | Canola | nucleus | 9.33 | 10.24 |
Protein Annotations
| MapMan:26.10.2.4 | Gene3D:3.40.50.300 | GO:A0A078EKN7 | EnsemblPlants:CDY01715 | ProteinID:CDY01715 | ProteinID:CDY01715.1 |
| GO:GO:0000166 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005525 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | EnsemblPlantsGene:GSBRNA2T00112808001 | InterPro:IPR024156 | InterPro:P-loop_NTPase | PFAM:PF00025 | PRINTS:PR00328 |
| PFscan:PS51417 | PANTHER:PTHR11711 | PANTHER:PTHR11711:SF303 | SMART:SM00175 | SMART:SM00177 | SMART:SM00178 |
| SUPFAM:SSF52540 | InterPro:Small_GTP-bd_dom | InterPro:Small_GTPase_ARF | InterPro:Small_GTPase_ARF/SAR | TIGRFAMs:TIGR00231 | UniParc:UPI0004EDE342 |
Description
BnaC04g30370D
Coordinates
chrLK031928:+:768397..770008
Molecular Weight (calculated)
25276.8 Da
IEP (calculated)
8.442
GRAVY (calculated)
-0.008
Length
225 amino acids
Sequence
(BLAST)
(BLAST)
001: MGLWDSLLNW LRSLFFKQEM ELSLVGLQNA GKTSLVNAIA TGGYSEDMIP TVGFNMRKVT KGNVTIKIWD LGGQRRFRTM WERYCRGVSA IVYVIDAADR
101: DSVPISRSEL HDLLTKPSLN GIPLLILGNK IDKSEALSKP ALVDQLGLDS VADREQTANE FIYLIGAEEE TGFSSEKHFP FIHSVKHMLV VLVKIRDPVG
201: LLRLEPKLSD KVNLQLFRLN LVYTA
101: DSVPISRSEL HDLLTKPSLN GIPLLILGNK IDKSEALSKP ALVDQLGLDS VADREQTANE FIYLIGAEEE TGFSSEKHFP FIHSVKHMLV VLVKIRDPVG
201: LLRLEPKLSD KVNLQLFRLN LVYTA
001: MGLLEAFLNW LRSLFFKQEM ELSLIGLQNA GKTSLVNVVA TGGYSEDMIP TVGFNMRKVT KGNVTIKLWD LGGQPRFRSM WERYCRAVSA IVYVVDAADP
101: DNLSVSKSEL HDLLSKTSLN GIPLLVLGNK IDKPGALSKE ALTDEMGLTS LTDREVCCFM ISCKNSTNID QVIDWLVKHS KSKN
101: DNLSVSKSEL HDLLSKTSLN GIPLLVLGNK IDKPGALSKE ALTDEMGLTS LTDREVCCFM ISCKNSTNID QVIDWLVKHS KSKN
Arabidopsis Description
ARL8AADP-ribosylation factor-like protein 8a [Source:UniProtKB/Swiss-Prot;Acc:Q8VY57]
SUBAcon: [extracellular,endoplasmic reticulum,vacuole,cytosol,plasma membrane,golgi]
SUBAcon: [extracellular,endoplasmic reticulum,vacuole,cytosol,plasma membrane,golgi]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.