Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 3
- extracellular 2
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 2
- golgi 2
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| KRH69305 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G37680.1 | KRH69305 | AT1G14340.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH17349 | Soybean | cytosol | 98.91 | 98.91 |
| EES05578 | Sorghum | cytosol | 94.02 | 94.02 |
| TraesCS6A01G293900.1 | Wheat | cytosol | 93.48 | 93.48 |
| TraesCS6B01G324400.2 | Wheat | cytosol | 93.48 | 93.48 |
| TraesCS6D01G274800.1 | Wheat | cytosol | 93.48 | 93.48 |
| Os02t0732500-01 | Rice | plasma membrane | 92.93 | 92.93 |
| HORVU6Hr1G073370.2 | Barley | cytosol | 92.93 | 92.93 |
| Bra028142.1-P | Field mustard | cytosol | 92.39 | 92.39 |
| AT5G37680.1 | Thale cress | cytosol | 92.39 | 92.39 |
| Solyc11g011040.1.1 | Tomato | plasma membrane | 91.85 | 91.85 |
| PGSC0003DMT400040524 | Potato | cytosol, plastid | 82.07 | 91.52 |
| GSMUA_Achr6P23020_001 | Banana | cytosol | 91.3 | 91.3 |
| VIT_14s0006g01090.t01 | Wine grape | cytosol | 77.17 | 86.06 |
| KRH77133 | Soybean | endoplasmic reticulum | 85.33 | 85.33 |
| KRH28350 | Soybean | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 84.24 | 84.24 |
| KRH58117 | Soybean | endoplasmic reticulum | 84.24 | 84.24 |
| Zm00001d000379_P002 | Maize | mitochondrion | 94.02 | 76.55 |
| Zm00001d017945_P002 | Maize | mitochondrion | 79.89 | 75.38 |
| KRG91118 | Soybean | extracellular | 49.46 | 72.22 |
| CDY01716 | Canola | cytosol | 81.52 | 66.67 |
| CDY01715 | Canola | cytosol | 81.52 | 66.67 |
| CDX74569 | Canola | cytosol | 81.52 | 66.37 |
| KRH50759 | Soybean | endoplasmic reticulum | 33.7 | 32.12 |
| KRH02329 | Soybean | endoplasmic reticulum, extracellular | 33.7 | 32.12 |
| KRH68446 | Soybean | endoplasmic reticulum | 33.15 | 31.61 |
| KRG96730 | Soybean | endoplasmic reticulum | 33.15 | 31.61 |
| KRH37008 | Soybean | endoplasmic reticulum | 32.61 | 31.09 |
| KRH11980 | Soybean | endoplasmic reticulum, extracellular | 32.61 | 31.09 |
| KRG92955 | Soybean | endoplasmic reticulum, extracellular | 32.61 | 31.09 |
| KRH33832 | Soybean | endoplasmic reticulum | 32.07 | 30.57 |
| KRH50760 | Soybean | endoplasmic reticulum | 30.43 | 29.02 |
| KRH02328 | Soybean | endoplasmic reticulum | 30.43 | 29.02 |
Protein Annotations
| EntrezGene:100305570 | MapMan:26.10.2.4 | Gene3D:3.40.50.300 | EMBL:ACUP02001259 | EMBL:BT089237 | UniProt:C6SVP4 |
| EnsemblPlantsGene:GLYMA_02G244500 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005525 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0007264 | GO:GO:0008150 |
| GO:GO:0009987 | InterPro:IPR024156 | EnsemblPlants:KRH72981 | ProteinID:KRH72981 | ProteinID:KRH72981.1 | InterPro:P-loop_NTPase |
| PFAM:PF00025 | PRINTS:PR00328 | PFscan:PS51417 | PANTHER:PTHR11711 | PANTHER:PTHR11711:SF303 | SMART:SM00173 |
| SMART:SM00175 | SMART:SM00177 | SMART:SM00178 | SUPFAM:SSF52540 | InterPro:Small_GTP-bd_dom | InterPro:Small_GTPase_ARF |
| InterPro:Small_GTPase_ARF/SAR | TIGRFAMs:TIGR00231 | UniParc:UPI0001B15820 | : | : | : |
Description
hypothetical protein
Coordinates
chr2:+:43256940..43260107
Molecular Weight (calculated)
20630.2 Da
IEP (calculated)
8.622
GRAVY (calculated)
-0.019
Length
184 amino acids
Sequence
(BLAST)
(BLAST)
001: MGLWDSFLNW LRSLFFKQEM ELSLVGLQNA GKTSLVNAIA TGGYSEDMIP TVGFNMRKVT KGNVTIKLWD LGGQRRFRSM WERYCRGVSA IVYVVDAADR
101: DSVPISRSEL HDLLTKPSLS AIPLLVLGNK IDKSEALSKQ ALVDQLGLES IKDREVCCYM ISCKDSVNID VVIDWLIKHS KTAK
101: DSVPISRSEL HDLLTKPSLS AIPLLVLGNK IDKSEALSKQ ALVDQLGLES IKDREVCCYM ISCKDSVNID VVIDWLIKHS KTAK
001: MGLWDSLLNW LRSLFFKQEM ELSLVGLQNA GKTSLVNAIA TGGYSEDMIP TVGFNMRKVT KGNVTIKIWD LGGQRRFRTM WERYCRGVSA IVYVIDAADR
101: DSVPISRSEL NDLLTKPSLN GIPLLILGNK IDKSEALSKQ ALVDQLGLES VTDREVCCYM ISCKDSINID AVIDWLIKHS RTAT
101: DSVPISRSEL NDLLTKPSLN GIPLLILGNK IDKSEALSKQ ALVDQLGLES VTDREVCCYM ISCKDSINID AVIDWLIKHS RTAT
Arabidopsis Description
ARL8CADP-ribosylation factor-like protein 8c [Source:UniProtKB/Swiss-Prot;Acc:Q8W4C8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.