Factsheet for Zm00001d017945_P002

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 4
extracellular 1
plastid 1
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d002122_P007
Zm00001d026425_P003

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G37680.1	Zm00001d002122_P007	AT1G14340.1	21798944
AT5G37680.1	Zm00001d026425_P003	AT1G14340.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os02t0732500-01	Rice	plasma membrane	79.49	84.24
TraesCS6D01G274800.1	Wheat	cytosol	76.41	80.98
TraesCS6B01G324400.2	Wheat	cytosol	76.41	80.98
TraesCS6A01G293900.1	Wheat	cytosol	76.41	80.98
HORVU6Hr1G073370.2	Barley	cytosol	75.9	80.43
KRH17349	Soybean	cytosol	75.38	79.89
KRH72981	Soybean	cytosol	75.38	79.89
AT5G37680.1	Thale cress	cytosol	73.85	78.26
PGSC0003DMT400040524	Potato	cytosol, plastid	66.15	78.18
Bra028142.1-P	Field mustard	cytosol	73.33	77.72
Solyc11g011040.1.1	Tomato	plasma membrane	73.33	77.72
GSMUA_Achr6P23020_001	Banana	cytosol	73.33	77.72
VIT_14s0006g01090.t01	Wine grape	cytosol	62.05	73.33
Zm00001d000379_P002	Maize	mitochondrion	79.49	68.58
Zm00001d048155_P001	Maize	extracellular	58.97	62.5
Zm00001d028112_P001	Maize	extracellular	58.46	61.96
CDY01716	Canola	cytosol	62.56	54.22
CDY01715	Canola	cytosol	62.56	54.22
CDX74569	Canola	cytosol	62.56	53.98
Zm00001d049068_P001	Maize	cytosol	30.77	30.93
Zm00001d040752_P001	Maize	endoplasmic reticulum, extracellular	29.23	29.53
Zm00001d040278_P001	Maize	extracellular	28.21	28.5
Zm00001d009211_P001	Maize	mitochondrion	29.23	17.43

Protein Annotations

EntrezGene:100193835	MapMan:26.10.2.4	Gene3D:3.40.50.300	UniProt:A0A1D6HJC2	ProteinID:AQK74575.1	GO:GO:0000166
GO:GO:0003674	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0007154	GO:GO:0007165	GO:GO:0007264	GO:GO:0008150	GO:GO:0009987	InterPro:IPR024156
InterPro:P-loop_NTPase	PFAM:PF00025	PRINTS:PR00328	PFscan:PS51417	PANTHER:PTHR11711	PANTHER:PTHR11711:SF303
SMART:SM00175	SMART:SM00177	SMART:SM00178	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase_ARF
InterPro:Small_GTPase_ARF/SAR	TIGRFAMs:TIGR00231	UniParc:UPI0002220E1C	EnsemblPlantsGene:Zm00001d017945	EnsemblPlants:Zm00001d017945_P002	EnsemblPlants:Zm00001d017945_T002

Description

ADP-ribosylation factor-like A1A

Coordinates

chr5:-:210540116..210543847

Molecular Weight (calculated)

22183.5 Da

IEP (calculated)

9.452

GRAVY (calculated)

0.095

Length

195 amino acids

Sequence
(BLAST)

001: MGLWDSLLNW LRRMLGRHRW SMLLLYASTQ SRYITMLSGV LILIHGFCAL QTGGYSEDMI PTVGFNMRKI TKGNVTIKLW DLGGQRRFRT MWERYCRGVS
101: AILYVVDAAD RDSIPIAKSE LLDLLTKQSL AGIPLLVLGN KIDKSEVLSK QALVDQLGLE SIKDREVCCY MISCKDSVNI DIVIDWLIKH SRTAK

Best Arabidopsis Sequence Match ( AT5G37680.2 )
(BLAST)

001: MIPTVGFNMR KVTKGNVTIK IWDLGGQRRF RTMWERYCRG VSAIVYVIDA ADRDSVPISR SELNDLLTKP SLNGIPLLIL GNKIDKSEAL SKQALVDQLG
101: LESVTDREVC CYMISCKDSI NIDAVIDWLI KHSRTAT

Arabidopsis Description

ARL8CADP-ribosylation factor-like protein 8c [Source:UniProtKB/Swiss-Prot;Acc:Q8W4C8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.