CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, endoplasmic reticulum, vacuole, cytosol, plasma membrane, golgi

Predictor Summary:

nucleus 2
cytosol 2
extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, secretory
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY18665	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	97.83	97.83
CDY08727	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	97.83	97.83
CDY36501	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	97.28	97.28
CDY43583	Canola	cytosol	39.67	96.05
AT5G67560.1	Thale cress	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	94.02	94.02
CDY02106	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	92.93	92.93
CDY23031	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	92.93	92.93
KRH28350	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	90.22	90.22
VIT_00s0601g00030.t01	Wine grape	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	90.22	90.22
Solyc02g064640.2.1	Tomato	extracellular	89.67	89.67
PGSC0003DMT400008577	Potato	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	89.67	89.67
KRH77133	Soybean	endoplasmic reticulum	89.67	89.67
KRH58117	Soybean	endoplasmic reticulum	89.67	89.67
Solyc02g092330.2.1	Tomato	plastid	88.59	88.59
GSMUA_Achr8P30960_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	88.04	88.04
PGSC0003DMT400055238	Potato	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	88.04	88.04
PGSC0003DMT400023482	Potato	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	87.5	87.5
Solyc03g043960.2.1	Tomato	plastid	86.96	86.96
GSMUA_AchrUn_...	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	86.96	86.96
GSMUA_Achr1P22490_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	84.24	84.24
TraesCS4A01G045000.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	82.07	82.07
TraesCS4D01G260100.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	82.07	82.07
TraesCS4B01G260300.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	82.07	82.07
EER92687	Sorghum	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	81.52	81.52
Os03t0200800-01	Rice	plasma membrane	81.52	81.52
Zm00001d048155_P001	Maize	extracellular	79.89	79.89
Zm00001d028112_P001	Maize	extracellular	78.26	78.26
CDY06369	Canola	cytosol	69.02	69.78
HORVU4Hr1G070410.2	Barley	cytosol	82.07	62.4
CDY37846	Canola	cytosol, mitochondrion, nucleus, plastid	42.93	61.72
CDX68554	Canola	cytosol	41.85	59.69
CDY01716	Canola	cytosol	69.57	56.89
CDY01715	Canola	cytosol	69.57	56.89
CDX74569	Canola	cytosol	69.57	56.64
CDX91807	Canola	endoplasmic reticulum, extracellular	33.7	32.12
CDX90955	Canola	endoplasmic reticulum, extracellular	33.15	31.61
CDY22027	Canola	endoplasmic reticulum, extracellular	33.15	31.61
CDY65544	Canola	endoplasmic reticulum, extracellular	32.61	31.41
CDY32159	Canola	endoplasmic reticulum, golgi	32.61	31.09
CDY59269	Canola	endoplasmic reticulum, extracellular	32.61	30.77
CDY39001	Canola	endoplasmic reticulum, extracellular	32.61	30.77
CDY41713	Canola	endoplasmic reticulum, extracellular	32.61	30.77
CDX95000	Canola	endoplasmic reticulum, golgi	32.07	30.57
CDX93520	Canola	endoplasmic reticulum, golgi	32.07	30.57
CDY31105	Canola	endoplasmic reticulum, golgi	32.07	30.57
CDY07095	Canola	endoplasmic reticulum	32.61	14.67
CDY22028	Canola	nucleus	13.59	12.2

Protein Annotations

MapMan:26.10.2.4	Gene3D:3.40.50.300	GO:A0A078CX05	EnsemblPlants:CDX81307	ProteinID:CDX81307	ProteinID:CDX81307.1
GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	EnsemblPlantsGene:GSBRNA2T00134834001	InterPro:IPR024156	InterPro:P-loop_NTPase	PFAM:PF00025	PRINTS:PR00328
PFscan:PS51417	PANTHER:PTHR11711	PANTHER:PTHR11711:SF293	SMART:SM00175	SMART:SM00177	SMART:SM00178
SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase_ARF	InterPro:Small_GTPase_ARF/SAR	TIGRFAMs:TIGR00231	UniParc:UPI0004EEDBE4

Description

BnaC09g07180D

Coordinates

chrLK031824:-:855917..857121

Molecular Weight (calculated)

20508.8 Da

IEP (calculated)

6.767

GRAVY (calculated)

-0.054

Length

184 amino acids

Sequence
(BLAST)

001: MGLWDAFLNW LRSLFFKQEM ELSLIGLQNA GKTSLVNVVA TGGYSEDMIP TVGFNMRKVT KGSLTIKLWD LGGQPRFRSM WERYCRSVSA IVYVVDAADP
101: DNLSVSKSEL HDLLSKTSLS GIPLLVLGNK IDKHGALSKD DLTEEMELKS LADREVCCFM ISCKNSTNID QVIDWLVKHS KSAS

Best Arabidopsis Sequence Match ( AT3G49860.1 )
(BLAST)

001: MTLQPNLQAK EMELSLVGLQ NSGKTSLVNV VATGEYSEDM IPTVGFNMRK VTKENVAIRL WDLGGQPRFR CMWERYCRAV SMIVYVVDAA DTENLSVSRS
101: ELHDLLSNAS LIGIPLLVLG NKIDIHGALS KEALTEEMGL SSVTSREVCC LMISCKNPTT IDQLTDWLVN HSKSKN

Arabidopsis Description

ARL8DADP-ribosylation factor-like protein 8d [Source:UniProtKB/Swiss-Prot;Acc:F4IZ82]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.