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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 1
  • cytosol 2
  • mitochondrion 1
  • plastid 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, nucleus
BaCelLo:nucleus
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:plastid
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX89326
CDX89402
CDX89404
CDX92816
CDX94317
CDX94426
CDX94429
CDY42730
CDY49480
CDY66007

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G47200.1 CDX89402 AT4G25660.1 21798944
AT5G47200.1 CDX89404 AT4G25660.1 21798944
AT5G47200.1 CDX94426 AT4G25660.1 21798944
AT5G47200.1 CDX94429 AT4G25660.1 21798944
AT5G47200.1 CDY49480 AT4G25660.1 21798944
AT5G47200.1 CDY66007 AT4G25660.1 21798944
AT5G47200.1 CDX89326 AT4G26550.1 21798944
AT5G47200.1 CDX92816 AT4G26550.1 21798944
AT5G47200.1 CDX94317 AT4G26550.1 21798944
AT5G47200.1 CDY42730 AT4G26550.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra022113.1-P Field mustard cytosol 93.67 73.27
CDY28967 Canola cytosol 93.67 73.27
CDY43436 Canola cytosol 93.67 73.27
CDY40564 Canola cytosol 93.67 73.27
CDY67887 Canola cytosol 93.67 72.91
CDY33521 Canola cytosol 92.41 72.28
CDX77748 Canola cytosol 92.41 72.28
AT5G47200.1 Thale cress cytosol 91.77 71.78
CDX90468 Canola cytosol 91.14 71.29
CDY65880 Canola cytosol 90.51 70.79
CDX76566 Canola cytosol 90.51 70.79
CDY52557 Canola cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole 90.51 67.14
CDY38404 Canola endoplasmic reticulum 90.51 65.3
CDY09621 Canola cytosol 91.77 59.67
CDY47919 Canola vacuole 65.82 50.49
CDY38055 Canola cytosol 75.32 50.21
CDY56593 Canola cytosol 63.92 49.03
CDX73855 Canola cytosol 63.92 49.03
CDY71506 Canola cytosol 53.8 39.35
CDY30926 Canola cytosol 53.8 39.35
CDX68365 Canola cytosol 53.8 39.35
CDX77855 Canola cytosol 53.16 38.89
CDX86045 Canola cytosol 53.16 38.89
CDY31592 Canola cytosol 52.53 38.43
CDX88726 Canola cytosol 51.9 37.96
CDX88725 Canola cytosol 51.9 37.96
CDX80224 Canola cytosol 50.63 37.56
CDY09249 Canola cytosol 50.63 37.04
CDY34032 Canola cytosol 34.18 36.73
CDY72056 Canola cytosol 28.48 36.0
CDY70243 Canola cytosol 34.18 35.53
CDY11256 Canola cytosol 48.73 35.48
CDY41572 Canola cytosol 48.73 35.32
CDX80871 Canola cytosol 48.73 34.53
CDY54609 Canola cytosol 47.47 34.4
CDX94925 Canola cytosol 34.81 33.54
CDY50126 Canola cytosol 41.14 30.95
CDY58166 Canola cytosol 41.14 30.95
CDX72559 Canola cytosol 41.14 30.81
CDY07577 Canola cytosol 51.9 30.71
CDY52746 Canola cytosol 51.9 30.48
CDY42961 Canola cytosol 40.51 30.33
CDY35596 Canola cytosol 40.51 30.33
CDY09641 Canola cytosol 40.51 30.33
CDY47039 Canola plasma membrane 39.87 29.86
CDX75535 Canola cytosol 39.24 29.38
CDX69177 Canola cytosol 39.24 29.38
CDX99131 Canola cytosol 53.16 27.27
Protein Annotations
Gene3D:3.40.50.300MapMan:35.1GO:A0A078D7U1EnsemblPlants:CDX85225ProteinID:CDX85225ProteinID:CDX85225.1
GO:GO:0000166GO:GO:0003674GO:GO:0003824GO:GO:0003924GO:GO:0005488GO:GO:0005525
GO:GO:0016787EnsemblPlantsGene:GSBRNA2T00142856001InterPro:P-loop_NTPasePFAM:PF00071PRINTS:PR00449PFscan:PS51419
PANTHER:PTHR24073PANTHER:PTHR24073:SF666SMART:SM00173SMART:SM00174SMART:SM00175SUPFAM:SSF52540
InterPro:Small_GTP-bd_domInterPro:Small_GTPaseTIGRFAMs:TIGR00231UniParc:UPI0004EDE7FC::
Description
BnaC07g25360D
Coordinates
chrLK031841:-:365013..366315
Molecular Weight (calculated)
17256.2 Da
IEP (calculated)
7.255
GRAVY (calculated)
-0.594
Length
158 amino acids
Sequence
(BLAST)
001: MLLDGSEKGP KASKDKKWDT AGQERFRTIT SSYYRGAHGI IVTYDVTDQE SFNNVKQWLN EIDRYASENV NKLLVGNKND LTSQKVVSTE TAQAFADELG
101: IPFLETSAKN ATNVEEAFMA MTAAIKTRMA SQPSGGAKPP TVQIRGQPVN QQSGCCSS
Best Arabidopsis Sequence Match ( AT1G02130.1 )
(BLAST)
001: MNPEYDYLFK LLLIGDSGVG KSCLLLRFSD DSYVESYIST IGVDFKIRTV EQDGKTIKLQ IWDTAGQERF RTITSSYYRG AHGIIIVYDV TDEESFNNVK
101: QWLSEIDRYA SDNVNKLLVG NKSDLTENRA IPYETAKAFA DEIGIPFMET SAKDATNVEQ AFMAMSASIK ERMASQPAGN NARPPTVQIR GQPVAQKNGC
201: CST
Arabidopsis Description
RABD2ARas-related protein RABD2a [Source:UniProtKB/Swiss-Prot;Acc:P28188]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.