CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
cytosol 1
extracellular 1
golgi 1
plasma membrane 3
endoplasmic reticulum 1
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, nucleus, plasma membrane
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX73855
CDY47919
CDY52126
CDY56593
CDY67905

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G26550.1	CDX73855	AT3G11730.1	21798944
AT4G26550.1	CDY47919	AT3G11730.1	21798944
AT4G26550.1	CDY56593	AT3G11730.1	21798944
AT4G26550.1	CDY52126	AT5G58750.1	21798944
AT4G26550.1	CDY67905	AT5G58750.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX92816	Canola	plasma membrane	97.42	97.84
CDX94317	Canola	cytosol, peroxisome, plasma membrane	89.27	92.04
CDX89326	Canola	cytosol, peroxisome, plasma membrane	88.84	91.59
AT4G26550.1	Thale cress	plasma membrane	88.41	91.56
KRH46429	Soybean	plasma membrane	72.1	76.36
KRG98435	Soybean	plasma membrane	72.1	76.36
VIT_19s0015g01110.t01	Wine grape	cytosol, peroxisome, plasma membrane, plastid	72.96	73.28
GSMUA_Achr7P06090_001	Banana	cytosol, peroxisome, plastid	71.24	73.13
GSMUA_Achr3P04250_001	Banana	plasma membrane	71.67	72.61
EER88631	Sorghum	plastid	69.96	72.44
PGSC0003DMT400057335	Potato	plasma membrane	70.39	70.39
TraesCS7D01G377300.1	Wheat	plasma membrane, plastid	68.24	70.04
Solyc07g065850.2.1	Tomato	plasma membrane	69.96	69.96
TraesCS7A01G381000.1	Wheat	plastid	67.81	69.0
Os06t0608600-01	Rice	plasma membrane	67.81	68.4
TraesCS7B01G126600.1	Wheat	plasma membrane, plastid	66.52	68.28
TraesCS7D01G221300.1	Wheat	golgi	66.52	68.28
EER97654	Sorghum	plasma membrane, plastid	66.52	67.98
TraesCS7A01G220800.1	Wheat	plastid	66.09	67.84
Os06t0300300-01	Rice	cytosol, endoplasmic reticulum, plasma membrane, plastid	66.09	67.54
TraesCS7B01G282900.1	Wheat	plastid	63.52	65.2
Zm00001d007053_P001	Maize	plasma membrane	66.09	55.0
CDY06543	Canola	endoplasmic reticulum, plasma membrane, vacuole	30.9	48.65
Bra019100.1-P	Field mustard	cytosol	90.13	46.46

Protein Annotations

MapMan:35.2	GO:A0A078HW74	UniProt:A0A078HW74	EnsemblPlants:CDY42730	ProteinID:CDY42730	ProteinID:CDY42730.1
GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0015031	GO:GO:0016020	GO:GO:0016021
GO:GO:0016192	EnsemblPlantsGene:GSBRNA2T00075270001	PFAM:PF04178	PANTHER:PTHR23137	PANTHER:PTHR23137:SF10	TMHMM:TMhelix
UniParc:UPI0004EF47F6	InterPro:Vesicle_transpt_Got1/SFT2	InterPro:Vesicle_transpt_SFT2	SEG:seg	:	:

Description

BnaA03g48090DVesicle transport protein [Source:UniProtKB/TrEMBL;Acc:A0A078HW74]

Coordinates

chrLK032533:+:13557..15164

Molecular Weight (calculated)

24868.2 Da

IEP (calculated)

8.041

GRAVY (calculated)

0.517

Length

233 amino acids

Sequence
(BLAST)

001: MSQGWFSLGG STSVDQQQQP EQQKSGSSLL ADWNSYAAAR DVEEGGGGSG SFGFDIESAV RSANDTVSGT FSVVSKGVRD IPGNLSSATS SMPSGKALMY
101: FGLLLASGVF FIFIAFTMFL PVMVLMPQKF AICFTLGCGF IIGSFFALRG PQNQLAHMSS MERLPLTIGF IATMVGTIYV SMVLHSYILS VVFSVLQVLA
201: LVYYCISYFP GGSSGMRFLS SALTSSVLRV FGR

Best Arabidopsis Sequence Match ( AT4G26550.1 )
(BLAST)

001: MSQGWFSMGG SSTVDQQQQS GSSLLADWNS YAASRDFEES GGSFGFDIES AVRSANDTVS GTFSVVSKGV RDIPGSLQSA TSSMPSGKAL MYFGLLLASG
101: VFFIFIAFTM FLPVMVLMPQ KFAICFTLGC GFIIGSFFAL RGPKNQLAHM SSMERLPSTL GFIATMVGTI YVSMVLHSYI LSVLFSVLQV LALVYYCISY
201: FPGGSSGMRF LSSALTSSAL RVFGR

Arabidopsis Description

Vesicle transport protein [Source:UniProtKB/TrEMBL;Acc:A0A178UYE8]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.