Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- plastid 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 2
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra001418.1-P | |
| Bra002620.1-P | |
| Bra038676.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G26550.1 | Bra001418.1-P | AT3G11730.1 | 21798944 |
| AT4G26550.1 | Bra038676.1-P | AT3G11730.1 | 21798944 |
| AT4G26550.1 | Bra002620.1-P | AT5G58750.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX92816 | Canola | plasma membrane | 47.57 | 92.67 |
| CDY42730 | Canola | plasma membrane | 46.46 | 90.13 |
| Bra026423.1-P | Field mustard | plasma membrane | 43.14 | 86.28 |
| AT4G26550.1 | Thale cress | plasma membrane | 42.92 | 86.22 |
| KRG98435 | Soybean | plasma membrane | 35.4 | 72.73 |
| KRH46429 | Soybean | plasma membrane | 35.18 | 72.27 |
| VIT_19s0015g01110.t01 | Wine grape | cytosol, peroxisome, plasma membrane, plastid | 35.4 | 68.97 |
| GSMUA_Achr7P06090_001 | Banana | cytosol, peroxisome, plastid | 34.51 | 68.72 |
| GSMUA_Achr3P04250_001 | Banana | plasma membrane | 34.96 | 68.7 |
| TraesCS7A01G220800.1 | Wheat | plastid | 33.63 | 66.96 |
| EER88631 | Sorghum | plastid | 33.19 | 66.67 |
| PGSC0003DMT400057335 | Potato | plasma membrane | 34.29 | 66.52 |
| TraesCS7B01G126600.1 | Wheat | plasma membrane, plastid | 33.41 | 66.52 |
| TraesCS7D01G221300.1 | Wheat | golgi | 33.41 | 66.52 |
| EER97654 | Sorghum | plasma membrane, plastid | 33.41 | 66.23 |
| Solyc07g065850.2.1 | Tomato | plasma membrane | 34.07 | 66.09 |
| Os06t0300300-01 | Rice | cytosol, endoplasmic reticulum, plasma membrane, plastid | 32.96 | 65.35 |
| TraesCS7D01G377300.1 | Wheat | plasma membrane, plastid | 32.3 | 64.32 |
| Os06t0608600-01 | Rice | plasma membrane | 32.74 | 64.07 |
| TraesCS7A01G381000.1 | Wheat | plastid | 32.3 | 63.76 |
| TraesCS7B01G282900.1 | Wheat | plastid | 29.87 | 59.47 |
| Zm00001d007053_P001 | Maize | plasma membrane | 32.96 | 53.21 |
Protein Annotations
| Gene3D:3.30.300.90 | Gene3D:3.90.1010.10 | MapMan:35.1 | InterPro:BolA | InterPro:BolA-like_sf | EnsemblPlantsGene:Bra019100 |
| EnsemblPlants:Bra019100.1 | EnsemblPlants:Bra019100.1-P | InterPro:Fe-S_metab-assoc_dom | GO:GO:0005575 | GO:GO:0006810 | GO:GO:0008150 |
| GO:GO:0015031 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016192 | UniProt:M4DRF7 | PFAM:PF01722 |
| PFAM:PF02657 | PFAM:PF04178 | PANTHER:PTHR23137 | PANTHER:PTHR23137:SF10 | SUPFAM:SSF82649 | SUPFAM:SSF82657 |
| TMHMM:TMhelix | UniParc:UPI00025411E3 | InterPro:Vesicle_transpt_Got1/SFT2 | InterPro:Vesicle_transpt_SFT2 | SEG:seg | : |
Description
AT4G26550 (E=3e-099) | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SFT2-like (InterPro:IPR011691); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G56020.1); Has 452 Blast hits to 452 proteins in 136 species: Archae - 0; Bacteria - 0; Metazoa - 198; Fungi - 89; Plants - 61; Viruses - 0; Other Eukaryotes - 104 (source: NCBI BLink).
Coordinates
chrA03:-:26315723..26317978
Molecular Weight (calculated)
48632.6 Da
IEP (calculated)
6.887
GRAVY (calculated)
0.104
Length
452 amino acids
Sequence
(BLAST)
(BLAST)
001: MSQGWFSLGG STSADQKQPE QQKSGSSLLA DWNSYAATRD VEEGGGGSGS FGFDIESAVR SANDTVSGTF SVVSKGVRDI PGNLSSATSS MPSGKALMYF
101: GLLLASGVFF IFIAFTMFLP VMVLMPQKFA ICFTLGCGFI IGSFFALRGP QNQLAHMSSM ERLPLTIGFI ATMVGTIYVS MVLHSYILSV VFSVLQVLAL
201: VYYCISYFPG GSSGMSTRAK GQVRAARRGR TKYKDASLRS GFRAFFDEER NFVYEADSDS VLTKGLAALL VKGLSGRTVT EIVRVTPDFA VLLGLKQTLT
301: PSRSNGFLNM LKLMQKKAMS LEVKGVDETI VLEADSEPKP SVSEVEDSDN GSNVVALGSR GMRIRERLEE ELSPVELEVE DVSYQHAGHA GVRGGGSAGA
401: DGETHFSLRV VLDAFQGRSL VKGHRMVYDL LREELLSGLH ALSIVAKTPA EV
101: GLLLASGVFF IFIAFTMFLP VMVLMPQKFA ICFTLGCGFI IGSFFALRGP QNQLAHMSSM ERLPLTIGFI ATMVGTIYVS MVLHSYILSV VFSVLQVLAL
201: VYYCISYFPG GSSGMSTRAK GQVRAARRGR TKYKDASLRS GFRAFFDEER NFVYEADSDS VLTKGLAALL VKGLSGRTVT EIVRVTPDFA VLLGLKQTLT
301: PSRSNGFLNM LKLMQKKAMS LEVKGVDETI VLEADSEPKP SVSEVEDSDN GSNVVALGSR GMRIRERLEE ELSPVELEVE DVSYQHAGHA GVRGGGSAGA
401: DGETHFSLRV VLDAFQGRSL VKGHRMVYDL LREELLSGLH ALSIVAKTPA EV
001: MSQGWFSMGG SSTVDQQQQS GSSLLADWNS YAASRDFEES GGSFGFDIES AVRSANDTVS GTFSVVSKGV RDIPGSLQSA TSSMPSGKAL MYFGLLLASG
101: VFFIFIAFTM FLPVMVLMPQ KFAICFTLGC GFIIGSFFAL RGPKNQLAHM SSMERLPSTL GFIATMVGTI YVSMVLHSYI LSVLFSVLQV LALVYYCISY
201: FPGGSSGMRF LSSALTSSAL RVFGR
101: VFFIFIAFTM FLPVMVLMPQ KFAICFTLGC GFIIGSFFAL RGPKNQLAHM SSMERLPSTL GFIATMVGTI YVSMVLHSYI LSVLFSVLQV LALVYYCISY
201: FPGGSSGMRF LSSALTSSAL RVFGR
Arabidopsis Description
Vesicle transport protein [Source:UniProtKB/TrEMBL;Acc:A0A178UYE8]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.