Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 5
- cytosol 1
- plasma membrane 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7D01G377300.1 | Wheat | plasma membrane, plastid | 97.82 | 98.68 |
| TraesCS7B01G282900.1 | Wheat | plastid | 92.14 | 92.95 |
| EER88631 | Sorghum | plastid | 84.72 | 86.22 |
| Os06t0608600-01 | Rice | plasma membrane | 86.03 | 85.28 |
| VIT_19s0015g01110.t01 | Wine grape | cytosol, peroxisome, plasma membrane, plastid | 72.05 | 71.12 |
| AT4G26550.1 | Thale cress | plasma membrane | 69.43 | 70.67 |
| KRG98435 | Soybean | plasma membrane | 67.69 | 70.45 |
| KRH46429 | Soybean | plasma membrane | 67.69 | 70.45 |
| CDX94317 | Canola | cytosol, peroxisome, plasma membrane | 69.43 | 70.35 |
| Bra026423.1-P | Field mustard | plasma membrane | 69.0 | 69.91 |
| CDX89326 | Canola | cytosol, peroxisome, plasma membrane | 69.0 | 69.91 |
| CDY42730 | Canola | plasma membrane | 69.0 | 67.81 |
| CDX92816 | Canola | plasma membrane | 68.56 | 67.67 |
| TraesCS7A01G220800.1 | Wheat | plastid | 66.81 | 67.4 |
| GSMUA_Achr3P04250_001 | Banana | plasma membrane | 67.25 | 66.96 |
| AT5G56020.1 | Thale cress | plasma membrane | 66.38 | 66.09 |
| PGSC0003DMT400057335 | Potato | plasma membrane | 66.38 | 65.24 |
| Solyc07g065850.2.1 | Tomato | plasma membrane | 65.94 | 64.81 |
| CDY06543 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 26.64 | 41.22 |
| Bra019100.1-P | Field mustard | cytosol | 63.76 | 32.3 |
Protein Annotations
| EnsemblPlants:TraesCS7A01G381000.1 | EnsemblPlantsGene:TraesCS7A01G381000 | GO:GO:0005575 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0016020 |
| GO:GO:0016021 | GO:GO:0016192 | InterPro:Vesicle_transpt_Got1/SFT2 | InterPro:Vesicle_transpt_SFT2 | PANTHER:PTHR23137 | PANTHER:PTHR23137:SF10 |
| PFAM:PF04178 | SEG:seg | TMHMM:TMhelix | MapMan:35.2 | : | : |
Description
No Description!
Coordinates
chr7A:+:556156034..556158348
Molecular Weight (calculated)
24607.1 Da
IEP (calculated)
9.672
GRAVY (calculated)
0.627
Length
229 amino acids
Sequence
(BLAST)
(BLAST)
001: MQAWFSGSGP SPSFSSSAAS SQPPPSLLAE WNSYAAARSA EEDVGGGFGI DIEAAVRSAN DRVTGTFGVV SKGVRGFPGS FQSSTSSVPS GKSLMYFGLF
101: LASGIFLVFI AFTIFLPVMV IMPQKFAICF TMGCAFIIGS FFALKGPKNQ LFHMISRERL PFTIGFVGSM FATIYVSMVL HSYILSVFFS CLQILALVYY
201: AISYFPGGSA GMKFLSSTLV ASVLRCFRR
101: LASGIFLVFI AFTIFLPVMV IMPQKFAICF TMGCAFIIGS FFALKGPKNQ LFHMISRERL PFTIGFVGSM FATIYVSMVL HSYILSVFFS CLQILALVYY
201: AISYFPGGSA GMKFLSSTLV ASVLRCFRR
001: MSQGWFSMGG SSTVDQQQQS GSSLLADWNS YAASRDFEES GGSFGFDIES AVRSANDTVS GTFSVVSKGV RDIPGSLQSA TSSMPSGKAL MYFGLLLASG
101: VFFIFIAFTM FLPVMVLMPQ KFAICFTLGC GFIIGSFFAL RGPKNQLAHM SSMERLPSTL GFIATMVGTI YVSMVLHSYI LSVLFSVLQV LALVYYCISY
201: FPGGSSGMRF LSSALTSSAL RVFGR
101: VFFIFIAFTM FLPVMVLMPQ KFAICFTLGC GFIIGSFFAL RGPKNQLAHM SSMERLPSTL GFIATMVGTI YVSMVLHSYI LSVLFSVLQV LALVYYCISY
201: FPGGSSGMRF LSSALTSSAL RVFGR
Arabidopsis Description
Vesicle transport protein [Source:UniProtKB/TrEMBL;Acc:A0A178UYE8]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.