Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 1
- cytosol 1
- plasma membrane 4
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT4G26550.1 | Thale cress | plasma membrane | 83.04 | 84.89 |
| GSMUA_Achr7P06090_001 | Banana | cytosol, peroxisome, plastid | 72.17 | 73.13 |
| KRH46429 | Soybean | plasma membrane | 69.13 | 72.27 |
| KRG98435 | Soybean | plasma membrane | 68.26 | 71.36 |
| VIT_19s0015g01110.t01 | Wine grape | cytosol, peroxisome, plasma membrane, plastid | 71.74 | 71.12 |
| TraesCS7A01G220800.1 | Wheat | plastid | 69.57 | 70.48 |
| TraesCS7B01G126600.1 | Wheat | plasma membrane, plastid | 69.13 | 70.04 |
| TraesCS7D01G221300.1 | Wheat | golgi | 69.13 | 70.04 |
| GSMUA_Achr3P04250_001 | Banana | plasma membrane | 69.57 | 69.57 |
| EER88631 | Sorghum | plastid | 67.39 | 68.89 |
| EER97654 | Sorghum | plasma membrane, plastid | 67.83 | 68.42 |
| Os06t0300300-01 | Rice | cytosol, endoplasmic reticulum, plasma membrane, plastid | 67.39 | 67.98 |
| TraesCS7D01G377300.1 | Wheat | plasma membrane, plastid | 66.52 | 67.4 |
| PGSC0003DMT400057335 | Potato | plasma membrane | 68.26 | 67.38 |
| Solyc07g065850.2.1 | Tomato | plasma membrane | 67.83 | 66.95 |
| TraesCS7A01G381000.1 | Wheat | plastid | 66.09 | 66.38 |
| Os06t0608600-01 | Rice | plasma membrane | 66.52 | 66.23 |
| TraesCS7B01G282900.1 | Wheat | plastid | 61.74 | 62.56 |
| Zm00001d007053_P001 | Maize | plasma membrane | 67.39 | 55.36 |
| CDY06543 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 32.17 | 50.0 |
Protein Annotations
| MapMan:35.2 | EntrezGene:835700 | ProteinID:AED96710.1 | ProteinID:ANM68337.1 | ArrayExpress:AT5G56020 | EnsemblPlantsGene:AT5G56020 |
| RefSeq:AT5G56020 | TAIR:AT5G56020 | RefSeq:AT5G56020-TAIR-G | EnsemblPlants:AT5G56020.1 | TAIR:AT5G56020.1 | ProteinID:BAB09284.1 |
| ncoils:Coil | GO:GO:0005575 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0015031 | GO:GO:0016020 |
| GO:GO:0016021 | GO:GO:0016192 | RefSeq:NP_001330101.1 | RefSeq:NP_200413.1 | PFAM:PF04178 | PO:PO:0000013 |
| PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 |
| PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 |
| PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 |
| PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 |
| PANTHER:PTHR23137 | PANTHER:PTHR23137:SF10 | UniProt:Q9FKU4 | TMHMM:TMhelix | UniParc:UPI000009ECFB | InterPro:Vesicle_transpt_Got1/SFT2 |
| InterPro:Vesicle_transpt_SFT2 | SEG:seg | : | : | : | : |
Description
Vesicle transport protein [Source:UniProtKB/TrEMBL;Acc:Q9FKU4]
Coordinates
chr5:+:22684386..22686466
Molecular Weight (calculated)
24868.3 Da
IEP (calculated)
8.039
GRAVY (calculated)
0.438
Length
230 amino acids
Sequence
(BLAST)
(BLAST)
001: MEKMAKGWFP MSGTSSSGDQ QQQPLQTGGT SLLADWNSYA ASRDFEEDTG TLGFDIESAV RSANDTVSGT FNVVSKGVRD NLQSATSSMP SGKALMYFGL
101: LLASGVFFIF IAFTMFLPVM VLMPQKFAIC FTLGCGFIIG SFFALRGPQN QLAHMSSAER LPLTLGFIAT MVGTIYVSMV LHSYILSVIF SALQVIALAY
201: YCISYFPGGS SGMKFLSSTL TSSVFRMFGR
101: LLASGVFFIF IAFTMFLPVM VLMPQKFAIC FTLGCGFIIG SFFALRGPQN QLAHMSSAER LPLTLGFIAT MVGTIYVSMV LHSYILSVIF SALQVIALAY
201: YCISYFPGGS SGMKFLSSTL TSSVFRMFGR
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.