Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, plastid
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 3
- cytosol 1
- extracellular 1
- golgi 1
- plasma membrane 3
- endoplasmic reticulum 1
- vacuole 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7A01G381000.1 | Wheat | plastid | 98.68 | 97.82 |
| TraesCS7B01G282900.1 | Wheat | plastid | 93.39 | 93.39 |
| EER88631 | Sorghum | plastid | 85.9 | 86.67 |
| Os06t0608600-01 | Rice | plasma membrane | 86.78 | 85.28 |
| VIT_19s0015g01110.t01 | Wine grape | cytosol, peroxisome, plasma membrane, plastid | 73.57 | 71.98 |
| AT4G26550.1 | Thale cress | plasma membrane | 70.93 | 71.56 |
| CDX94317 | Canola | cytosol, peroxisome, plasma membrane | 70.93 | 71.24 |
| KRG98435 | Soybean | plasma membrane | 68.72 | 70.91 |
| KRH46429 | Soybean | plasma membrane | 68.72 | 70.91 |
| Bra026423.1-P | Field mustard | plasma membrane | 70.48 | 70.8 |
| CDX89326 | Canola | cytosol, peroxisome, plasma membrane | 70.48 | 70.8 |
| CDY42730 | Canola | plasma membrane | 70.04 | 68.24 |
| CDX92816 | Canola | plasma membrane | 69.6 | 68.1 |
| GSMUA_Achr3P04250_001 | Banana | plasma membrane | 68.72 | 67.83 |
| TraesCS7D01G221300.1 | Wheat | golgi | 67.4 | 67.4 |
| AT5G56020.1 | Thale cress | plasma membrane | 67.4 | 66.52 |
| PGSC0003DMT400057335 | Potato | plasma membrane | 67.84 | 66.09 |
| Solyc07g065850.2.1 | Tomato | plasma membrane | 67.4 | 65.67 |
| CDY06543 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 27.31 | 41.89 |
| Bra019100.1-P | Field mustard | cytosol | 64.32 | 32.3 |
Protein Annotations
| EnsemblPlants:TraesCS7D01G377300.1 | EnsemblPlantsGene:TraesCS7D01G377300 | GO:GO:0005575 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0016020 |
| GO:GO:0016021 | GO:GO:0016192 | InterPro:Vesicle_transpt_Got1/SFT2 | InterPro:Vesicle_transpt_SFT2 | PANTHER:PTHR23137 | PANTHER:PTHR23137:SF10 |
| PFAM:PF04178 | SEG:seg | TMHMM:TMhelix | MapMan:35.2 | : | : |
Description
No Description!
Coordinates
chr7D:+:488779197..488781476
Molecular Weight (calculated)
24255.7 Da
IEP (calculated)
9.405
GRAVY (calculated)
0.628
Length
227 amino acids
Sequence
(BLAST)
(BLAST)
001: MQAWFSGSGP SPSSSAASSQ PPPSLLAEWN SYAAARSAEE DVGGGFGIDI EAAVRSANDR VTGTFGVVSK GVRGFPGSFQ SSTSSVPSGK SLMYFGLFLA
101: SGIFLVFIAF TIFLPVMVIM PQKFAICFTM GCAFIIGSFF ALKGPKNQLY HMISRERLPF TIGFVGSMFA TIYVSMVLHS YILSVLFSCL QILALVYYAI
201: SYFPGGSAGM KFLSSTLVAS VLRCFGR
101: SGIFLVFIAF TIFLPVMVIM PQKFAICFTM GCAFIIGSFF ALKGPKNQLY HMISRERLPF TIGFVGSMFA TIYVSMVLHS YILSVLFSCL QILALVYYAI
201: SYFPGGSAGM KFLSSTLVAS VLRCFGR
001: MSQGWFSMGG SSTVDQQQQS GSSLLADWNS YAASRDFEES GGSFGFDIES AVRSANDTVS GTFSVVSKGV RDIPGSLQSA TSSMPSGKAL MYFGLLLASG
101: VFFIFIAFTM FLPVMVLMPQ KFAICFTLGC GFIIGSFFAL RGPKNQLAHM SSMERLPSTL GFIATMVGTI YVSMVLHSYI LSVLFSVLQV LALVYYCISY
201: FPGGSSGMRF LSSALTSSAL RVFGR
101: VFFIFIAFTM FLPVMVLMPQ KFAICFTLGC GFIIGSFFAL RGPKNQLAHM SSMERLPSTL GFIATMVGTI YVSMVLHSYI LSVLFSVLQV LALVYYCISY
201: FPGGSSGMRF LSSALTSSAL RVFGR
Arabidopsis Description
Vesicle transport protein [Source:UniProtKB/TrEMBL;Acc:A0A178UYE8]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.