Factsheet for Bra026423.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
cytosol 1
plasma membrane 4
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra001418.1-P
Bra002620.1-P
Bra038676.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G26550.1	Bra001418.1-P	AT3G11730.1	21798944
AT4G26550.1	Bra038676.1-P	AT3G11730.1	21798944
AT4G26550.1	Bra002620.1-P	AT5G58750.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX89326	Canola	cytosol, peroxisome, plasma membrane	99.11	99.11
CDX94317	Canola	cytosol, peroxisome, plasma membrane	98.67	98.67
AT4G26550.1	Thale cress	plasma membrane	91.59	92.0
KRH46429	Soybean	plasma membrane	71.68	73.64
KRG98435	Soybean	plasma membrane	71.68	73.64
VIT_19s0015g01110.t01	Wine grape	cytosol, peroxisome, plasma membrane, plastid	74.78	72.84
EER88631	Sorghum	plastid	72.12	72.44
GSMUA_Achr7P06090_001	Banana	cytosol, peroxisome, plastid	72.57	72.25
GSMUA_Achr3P04250_001	Banana	plasma membrane	73.01	71.74
TraesCS7D01G377300.1	Wheat	plasma membrane, plastid	70.8	70.48
PGSC0003DMT400057335	Potato	plasma membrane	71.68	69.53
Solyc07g065850.2.1	Tomato	plasma membrane	71.24	69.1
TraesCS7A01G381000.1	Wheat	plastid	69.91	69.0
Os06t0608600-01	Rice	plasma membrane	70.35	68.83
TraesCS7A01G220800.1	Wheat	plastid	69.03	68.72
TraesCS7B01G126600.1	Wheat	plasma membrane, plastid	69.03	68.72
TraesCS7D01G221300.1	Wheat	golgi	69.03	68.72
EER97654	Sorghum	plasma membrane, plastid	69.03	68.42
Os06t0300300-01	Rice	cytosol, endoplasmic reticulum, plasma membrane, plastid	69.03	68.42
TraesCS7B01G282900.1	Wheat	plastid	65.49	65.2
Zm00001d007053_P001	Maize	plasma membrane	68.58	55.36
Bra019100.1-P	Field mustard	cytosol	86.28	43.14

Protein Annotations

EnsemblPlants:Bra026423.1	EnsemblPlants:Bra026423.1-P	EnsemblPlantsGene:Bra026423	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150
GO:GO:0015031	GO:GO:0016020	GO:GO:0016021	GO:GO:0016192	InterPro:Vesicle_transpt_Got1/SFT2	InterPro:Vesicle_transpt_SFT2
PANTHER:PTHR23137	PANTHER:PTHR23137:SF10	PFAM:PF04178	SEG:seg	TMHMM:TMhelix	UniParc:UPI000254555C
UniProt:M4ECB4	MapMan:35.2	:	:	:	:

Description

AT4G26550 (E=2e-108) | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SFT2-like (InterPro:IPR011691); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G56020.1); Has 452 Blast hits to 452 proteins in 136 species: Archae - 0; Bacteria - 0; Metazoa - 198; Fungi - 89; Plants - 61; Viruses - 0; Other Eukaryotes - 104 (source: NCBI BLink).

Coordinates

chrA01:-:9393587..9395127

Molecular Weight (calculated)

24261.5 Da

IEP (calculated)

7.338

GRAVY (calculated)

0.532

Length

226 amino acids

Sequence
(BLAST)

001: MSQGWFSMSS GDQQNDQQNQ SGSSLLADWN SYAASRDVEE GGGSFGFDIE SAVRSANDTV SGTFSVVSKG VRDIPGSLSS ATSSMPSGKA LMYFGLLLAS
101: GVFFIFIAFT MFLPVMVLMP QKFAICFTLG CGFIIGSFFA LRGPQNQLAH MTSMERLPLT IGFIATMVGT IYVSMVLHSY ILSVLFSVLQ VLALIYYCIS
201: YFPGGSSGMK FLGSALTSSV LRVFGR

Best Arabidopsis Sequence Match ( AT4G26550.1 )
(BLAST)

001: MSQGWFSMGG SSTVDQQQQS GSSLLADWNS YAASRDFEES GGSFGFDIES AVRSANDTVS GTFSVVSKGV RDIPGSLQSA TSSMPSGKAL MYFGLLLASG
101: VFFIFIAFTM FLPVMVLMPQ KFAICFTLGC GFIIGSFFAL RGPKNQLAHM SSMERLPSTL GFIATMVGTI YVSMVLHSYI LSVLFSVLQV LALVYYCISY
201: FPGGSSGMRF LSSALTSSAL RVFGR

Arabidopsis Description

Vesicle transport protein [Source:UniProtKB/TrEMBL;Acc:A0A178UYE8]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.