CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, plastid

Predictor Summary:

nucleus 1
plastid 2
mitochondrion 1
cytosol 1
plasma membrane 4
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane, plastid
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	plasma membrane
PProwler:	secretory
TargetP:	plastid
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
EER90109
EES02290
EES10859
EES11537
EES18842
EES19830
OQU75953
OQU80824

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G26550.1	EES10859	AT3G11730.1	21798944
AT4G26550.1	EES18842	AT3G11730.1	21798944
AT5G56020.1	EER90109	AT1G15760.1	21798944
AT5G56020.1	EES11537	AT1G15760.1	21798944
AT5G56020.1	OQU75953	AT1G15760.1	21798944
AT5G56020.1	OQU80824	AT1G15760.1	21798944
AT5G56020.1	EES02290	AT3G16310.1	21798944
AT5G56020.1	EES19830	AT3G16310.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7D01G221300.1	Wheat	golgi	89.91	90.31
TraesCS7B01G126600.1	Wheat	plasma membrane, plastid	89.47	89.87
TraesCS7A01G220800.1	Wheat	plastid	89.47	89.87
Os06t0300300-01	Rice	cytosol, endoplasmic reticulum, plasma membrane, plastid	88.16	88.16
Zm00001d007053_P001	Maize	plasma membrane	96.93	78.93
EER88631	Sorghum	plastid	69.74	70.67
AT4G26550.1	Thale cress	plasma membrane	69.3	70.22
KRH46429	Soybean	plasma membrane	67.11	69.55
KRG98435	Soybean	plasma membrane	66.67	69.09
Bra026423.1-P	Field mustard	plasma membrane	68.42	69.03
CDX89326	Canola	cytosol, peroxisome, plasma membrane	68.42	69.03
CDX94317	Canola	cytosol, peroxisome, plasma membrane	68.42	69.03
GSMUA_Achr3P04250_001	Banana	plasma membrane	68.42	67.83
AT5G56020.1	Thale cress	plasma membrane	68.42	67.83
VIT_19s0015g01110.t01	Wine grape	cytosol, peroxisome, plasma membrane, plastid	68.42	67.24
CDX92816	Canola	plasma membrane	67.98	66.81
CDY42730	Canola	plasma membrane	67.98	66.52
PGSC0003DMT400057335	Potato	plasma membrane	66.67	65.24
Solyc07g065850.2.1	Tomato	plasma membrane	66.67	65.24
CDY06543	Canola	endoplasmic reticulum, plasma membrane, vacuole	25.88	39.86
Bra019100.1-P	Field mustard	cytosol	66.23	33.41

Protein Annotations

EnsemblPlants:EER97654	EnsemblPlantsGene:SORBI_3002G398000	EntrezGene:8073116	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150
GO:GO:0015031	GO:GO:0016020	GO:GO:0016021	GO:GO:0016192	InterPro:Vesicle_transpt_Got1/SFT2	InterPro:Vesicle_transpt_SFT2
PANTHER:PTHR23137	PANTHER:PTHR23137:SF10	PFAM:PF04178	ProteinID:EER97654	ProteinID:EER97654.1	RefSeq:XP_002461133.1
SEG:seg	TMHMM:TMhelix	UniParc:UPI0001A83488	UniProt:C5X420	MapMan:35.2	:

Description

hypothetical protein

Coordinates

chr2:+:74950011..74954763

Molecular Weight (calculated)

24104.2 Da

IEP (calculated)

9.123

GRAVY (calculated)

0.638

Length

228 amino acids

Sequence
(BLAST)

001: MHKTAQAWFT GGTAASTGTA AESQPSLLAD WNSYAATRSD ASSSSPLPFD IEAAVRSAND TVSGTFSSVT KGVRELPGSF QSATSSFPSG KALMYFGLFL
101: ATGIFFVFIA FALFLPVMVL MPQKFAICFT LGCALIIASL FALKGPANQL AHMTSKERLP FSVGFIGCMV GTIYVSMVLH SYFLSVIFSV LQVLALAYYT
201: ISYFPGGSSG LKFISSGLLS SAASLFSR

Best Arabidopsis Sequence Match ( AT4G26550.1 )
(BLAST)

001: MSQGWFSMGG SSTVDQQQQS GSSLLADWNS YAASRDFEES GGSFGFDIES AVRSANDTVS GTFSVVSKGV RDIPGSLQSA TSSMPSGKAL MYFGLLLASG
101: VFFIFIAFTM FLPVMVLMPQ KFAICFTLGC GFIIGSFFAL RGPKNQLAHM SSMERLPSTL GFIATMVGTI YVSMVLHSYI LSVLFSVLQV LALVYYCISY
201: FPGGSSGMRF LSSALTSSAL RVFGR

Arabidopsis Description

Vesicle transport protein [Source:UniProtKB/TrEMBL;Acc:A0A178UYE8]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.