Factsheet for Zm00001d007053_P001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 1
cytosol 1
mitochondrion 1
plasma membrane 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, mitochondrion, plasma membrane, plastid
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

mitochondrion: 27297264
plasma membrane: 27341663

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 27341663 doi

P Voothuluru, JC Anderson, RE Sharp, SC Peck

Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d002096_P001
Zm00001d003588_P002
Zm00001d003789_P002
Zm00001d005215_P001
Zm00001d008871_P001
Zm00001d010783_P001
Zm00001d035741_P002
Zm00001d036740_P001
Zm00001d037494_P001
Zm00001d038803_P001
Zm00001d045137_P001
Zm00001d046580_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G26550.1	Zm00001d003588_P002	AT3G11730.1	21798944
AT4G26550.1	Zm00001d003789_P002	AT3G11730.1	21798944
AT4G26550.1	Zm00001d005215_P001	AT3G11730.1	21798944
AT4G26550.1	Zm00001d035741_P002	AT3G11730.1	21798944
AT5G56020.1	Zm00001d002096_P001	AT1G15760.1	21798944
AT5G56020.1	Zm00001d036740_P001	AT1G15760.1	21798944
AT5G56020.1	Zm00001d037494_P001	AT1G15760.1	21798944
AT5G56020.1	Zm00001d045137_P001	AT1G15760.1	21798944
AT5G56020.1	Zm00001d046580_P001	AT1G15760.1	21798944
AT5G56020.1	Zm00001d008871_P001	AT3G16310.1	21798944
AT5G56020.1	Zm00001d010783_P001	AT3G16310.1	21798944
AT5G56020.1	Zm00001d038803_P001	AT3G16310.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER97654	Sorghum	plasma membrane, plastid	78.93	96.93
Os06t0300300-01	Rice	cytosol, endoplasmic reticulum, plasma membrane, plastid	72.14	88.6
TraesCS7D01G221300.1	Wheat	golgi	71.79	88.55
TraesCS7B01G126600.1	Wheat	plasma membrane, plastid	71.43	88.11
TraesCS7A01G220800.1	Wheat	plastid	71.43	88.11
AT4G26550.1	Thale cress	plasma membrane	56.07	69.78
KRH46429	Soybean	plasma membrane	54.64	69.55
KRG98435	Soybean	plasma membrane	54.29	69.09
Bra026423.1-P	Field mustard	plasma membrane	55.36	68.58
CDX89326	Canola	cytosol, peroxisome, plasma membrane	55.36	68.58
CDX94317	Canola	cytosol, peroxisome, plasma membrane	55.36	68.58
GSMUA_Achr3P04250_001	Banana	plasma membrane	55.71	67.83
VIT_19s0015g01110.t01	Wine grape	cytosol, peroxisome, plasma membrane, plastid	56.07	67.67
AT5G56020.1	Thale cress	plasma membrane	55.36	67.39
CDX92816	Canola	plasma membrane	55.0	66.38
CDY42730	Canola	plasma membrane	55.0	66.09
PGSC0003DMT400057335	Potato	plasma membrane	54.29	65.24
Solyc07g065850.2.1	Tomato	plasma membrane	54.29	65.24
CDY06543	Canola	endoplasmic reticulum, plasma membrane, vacuole	21.07	39.86
Bra019100.1-P	Field mustard	cytosol	53.21	32.96

Protein Annotations

EnsemblPlants:Zm00001d007053_P001	EnsemblPlants:Zm00001d007053_T001	EnsemblPlantsGene:Zm00001d007053	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150
GO:GO:0015031	GO:GO:0016020	GO:GO:0016021	GO:GO:0016192	InterPro:Vesicle_transpt_Got1/SFT2	InterPro:Vesicle_transpt_SFT2
PANTHER:PTHR23137	PANTHER:PTHR23137:SF10	PFAM:PF04178	ProteinID:ONM25639.1	SEG:seg	TMHMM:TMhelix
UniParc:UPI0008426ACF	UniProt:A0A1D6F2I0	MapMan:35.2	:	:	:

Description

Got1/Sft2-like vescicle transport protein family

Coordinates

chr2:+:220960644..220965700

Molecular Weight (calculated)

29618.7 Da

IEP (calculated)

9.913

GRAVY (calculated)

0.378

Length

280 amino acids

Sequence
(BLAST)

001: MGTDGRADEK KHFPSAARKE NQFSLEKKVP SFSSQFLRSL ASASTPARPA VAMHKTAQAW FTGGTAASSG AAAESQPSLL ADWNSYAATR SDASSSSPLP
101: FDIEAAVRSA NDTVSGTLSS VTKGVRELPG SFQSATSSFP SGKALMYFGL FLATGIFFVF IAFALFLPVM VLMPQKFAIS FTLGCALIIA SLFALKGPAN
201: QLAHMTSKER LPFSVGFIGC MVGTIYVSMV LHSYFLSVIF SVLQVLALAY YTISYFPGGS SGLKFISSGL LSSATSCFGR

Best Arabidopsis Sequence Match ( AT4G26550.1 )
(BLAST)

001: MSQGWFSMGG SSTVDQQQQS GSSLLADWNS YAASRDFEES GGSFGFDIES AVRSANDTVS GTFSVVSKGV RDIPGSLQSA TSSMPSGKAL MYFGLLLASG
101: VFFIFIAFTM FLPVMVLMPQ KFAICFTLGC GFIIGSFFAL RGPKNQLAHM SSMERLPSTL GFIATMVGTI YVSMVLHSYI LSVLFSVLQV LALVYYCISY
201: FPGGSSGMRF LSSALTSSAL RVFGR

Arabidopsis Description

Vesicle transport protein [Source:UniProtKB/TrEMBL;Acc:A0A178UYE8]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.