Factsheet for Os06t0300300-01

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, plastid, cytosol, plasma membrane

Predictor Summary:

nucleus 1
mitochondrion 1
cytosol 1
plasma membrane 3
extracellular 1
endoplasmic reticulum 2
vacuole 1
golgi 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, endoplasmic reticulum, plasma membrane, plastid
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	plasma membrane
PProwler:	secretory
TargetP:	plastid
WoLF PSORT:	endoplasmic reticulum
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0200500-01
Os04t0644100-01
Os05t0520100-00
Os06t0179100-00
Os06t0645500-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G56020.1	Os04t0644100-01	AT1G15760.1	21798944
AT5G56020.1	Os06t0179100-00	AT1G15760.1	21798944
AT5G56020.1	Os06t0645500-01	AT1G15760.1	21798944
AT5G56020.1	Os01t0200500-01	AT3G16310.1	21798944
AT5G56020.1	Os05t0520100-00	AT3G16310.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER97654	Sorghum	plasma membrane, plastid	88.16	88.16
TraesCS7B01G126600.1	Wheat	plasma membrane, plastid	83.77	84.14
TraesCS7D01G221300.1	Wheat	golgi	83.33	83.7
TraesCS7A01G220800.1	Wheat	plastid	83.33	83.7
Zm00001d007053_P001	Maize	plasma membrane	88.6	72.14
KRH46429	Soybean	plasma membrane	68.86	71.36
KRG98435	Soybean	plasma membrane	67.98	70.45
AT4G26550.1	Thale cress	plasma membrane	68.42	69.33
Bra026423.1-P	Field mustard	plasma membrane	68.42	69.03
CDX89326	Canola	cytosol, peroxisome, plasma membrane	68.42	69.03
CDX94317	Canola	cytosol, peroxisome, plasma membrane	68.42	69.03
GSMUA_Achr3P04250_001	Banana	plasma membrane	68.42	67.83
AT5G56020.1	Thale cress	plasma membrane	67.98	67.39
CDX92816	Canola	plasma membrane	67.98	66.81
PGSC0003DMT400057335	Potato	plasma membrane	67.98	66.52
Solyc07g065850.2.1	Tomato	plasma membrane	67.98	66.52
CDY42730	Canola	plasma membrane	67.54	66.09
Os06t0608600-01	Rice	plasma membrane	66.67	65.8
VIT_19s0015g01110.t01	Wine grape	cytosol, peroxisome, plasma membrane, plastid	66.23	65.09
CDY06543	Canola	endoplasmic reticulum, plasma membrane, vacuole	26.32	40.54
Bra019100.1-P	Field mustard	cytosol	65.35	32.96

Protein Annotations

MapMan:35.2	EntrezGene:4340821	EMBL:AK068813	EMBL:AK109425	ProteinID:BAD53485.1	ProteinID:BAF19363.1
ProteinID:BAS97372.1	ProteinID:EEE65570.1	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0015031
GO:GO:0016020	GO:GO:0016021	GO:GO:0016192	EnsemblPlantsGene:Os06g0300300	EnsemblPlants:Os06t0300300-01	PFAM:PF04178
PANTHER:PTHR23137	PANTHER:PTHR23137:SF10	UniProt:Q5ZA38	TMHMM:TMhelix	UniParc:UPI0000446D67	InterPro:Vesicle_transpt_Got1/SFT2
InterPro:Vesicle_transpt_SFT2	RefSeq:XP_015640946.1	SEG:seg	:	:	:

Description

SFT2-like family protein. (Os06t0300300-01)

Coordinates

chr6:-:11184920..11189423

Molecular Weight (calculated)

24134.3 Da

IEP (calculated)

8.612

GRAVY (calculated)

0.659

Length

228 amino acids

Sequence
(BLAST)

001: MHKTAQAWFT GGPAAPAASA GESQPSLLAD WNSYAASRPD ASSSSPLPFD IEAAVRSAND TVSGTFSVVT KGVRELPGSF QSATSSFPSG KALMYFGLFL
101: ATGIFFVFIA FALFLPVMVI MPQKFAICFT LGCGLIIASI FALKGPASQF AHMTSMERLP FTGALIGCMV GTIYVSMFLH SYFLSVIFSV LQVLSLAYYT
201: ISYFPGGSSG LKFISSSLLS SVTSCFGR

Best Arabidopsis Sequence Match ( AT4G26550.1 )
(BLAST)

001: MSQGWFSMGG SSTVDQQQQS GSSLLADWNS YAASRDFEES GGSFGFDIES AVRSANDTVS GTFSVVSKGV RDIPGSLQSA TSSMPSGKAL MYFGLLLASG
101: VFFIFIAFTM FLPVMVLMPQ KFAICFTLGC GFIIGSFFAL RGPKNQLAHM SSMERLPSTL GFIATMVGTI YVSMVLHSYI LSVLFSVLQV LALVYYCISY
201: FPGGSSGMRF LSSALTSSAL RVFGR

Arabidopsis Description

Vesicle transport protein [Source:UniProtKB/TrEMBL;Acc:A0A178UYE8]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.