Factsheet for Os06t0608600-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
plastid 3
cytosol 1
plasma membrane 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0200500-01
Os04t0644100-01
Os05t0520100-00
Os06t0179100-00
Os06t0645500-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G56020.1	Os04t0644100-01	AT1G15760.1	21798944
AT5G56020.1	Os06t0179100-00	AT1G15760.1	21798944
AT5G56020.1	Os06t0645500-01	AT1G15760.1	21798944
AT5G56020.1	Os01t0200500-01	AT3G16310.1	21798944
AT5G56020.1	Os05t0520100-00	AT3G16310.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER88631	Sorghum	plastid	87.88	90.22
TraesCS7D01G377300.1	Wheat	plasma membrane, plastid	85.28	86.78
TraesCS7A01G381000.1	Wheat	plastid	85.28	86.03
TraesCS7B01G282900.1	Wheat	plastid	80.09	81.5
KRH46429	Soybean	plasma membrane	69.26	72.73
KRG98435	Soybean	plasma membrane	68.83	72.27
VIT_19s0015g01110.t01	Wine grape	cytosol, peroxisome, plasma membrane, plastid	71.43	71.12
Bra026423.1-P	Field mustard	plasma membrane	68.83	70.35
CDX89326	Canola	cytosol, peroxisome, plasma membrane	68.83	70.35
CDX94317	Canola	cytosol, peroxisome, plasma membrane	68.83	70.35
AT4G26550.1	Thale cress	plasma membrane	68.4	70.22
CDX92816	Canola	plasma membrane	69.26	68.97
CDY42730	Canola	plasma membrane	68.4	67.81
GSMUA_Achr3P04250_001	Banana	plasma membrane	66.67	66.96
Os06t0300300-01	Rice	cytosol, endoplasmic reticulum, plasma membrane, plastid	65.8	66.67
PGSC0003DMT400057335	Potato	plasma membrane	67.1	66.52
AT5G56020.1	Thale cress	plasma membrane	66.23	66.52
Solyc07g065850.2.1	Tomato	plasma membrane	66.67	66.09
CDY06543	Canola	endoplasmic reticulum, plasma membrane, vacuole	27.27	42.57
Bra019100.1-P	Field mustard	cytosol	64.07	32.74

Protein Annotations

MapMan:35.2	EntrezGene:4341495	EMBL:AK061418	EMBL:AK104440	ProteinID:BAD35620.1	ProteinID:BAF19955.1
ProteinID:BAS98556.1	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0015031	GO:GO:0016020
GO:GO:0016021	GO:GO:0016192	EnsemblPlantsGene:Os06g0608600	EnsemblPlants:Os06t0608600-01	PFAM:PF04178	PANTHER:PTHR23137
PANTHER:PTHR23137:SF10	UniProt:Q69V58	TMHMM:TMhelix	UniParc:UPI000040385C	InterPro:Vesicle_transpt_Got1/SFT2	InterPro:Vesicle_transpt_SFT2
RefSeq:XP_015643166.1	RefSeq:XP_015643167.1	SEG:seg	:	:	:

Description

SFT2-like family protein. (Os06t0608600-01);SFT2-like family protein. (Os06t0608600-02)

Coordinates

chr6:+:24223783..24226794

Molecular Weight (calculated)

24372.6 Da

IEP (calculated)

8.874

GRAVY (calculated)

0.582

Length

231 amino acids

Sequence
(BLAST)

001: MQAWFSGTGP SASSASSSSS PPQPSLLAEW NSYAAARSAE EEEDGGGGGF GIDIEAAVRS ANDRVSGTFG VVSKGVLGLP GSFKSTTSSV PSSKSLVYFG
101: LFLASGIFLV FIAFTIFLPV MVIMPQKFAI CFTAGCAFII GSFFALKGPK NQLYHMISKE RLPFTMGFVG SMAATIYVSM VLHSYILSVF FSCLQVLALA
201: YYAISYFPGG SAGMKFLSSA LVSSVLRCFG R

Best Arabidopsis Sequence Match ( AT4G26550.1 )
(BLAST)

001: MSQGWFSMGG SSTVDQQQQS GSSLLADWNS YAASRDFEES GGSFGFDIES AVRSANDTVS GTFSVVSKGV RDIPGSLQSA TSSMPSGKAL MYFGLLLASG
101: VFFIFIAFTM FLPVMVLMPQ KFAICFTLGC GFIIGSFFAL RGPKNQLAHM SSMERLPSTL GFIATMVGTI YVSMVLHSYI LSVLFSVLQV LALVYYCISY
201: FPGGSSGMRF LSSALTSSAL RVFGR

Arabidopsis Description

Vesicle transport protein [Source:UniProtKB/TrEMBL;Acc:A0A178UYE8]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.