Factsheet for TraesCS7D01G221300.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

plastid 2
mitochondrion 1
cytosol 1
extracellular 1
endoplasmic reticulum 2
vacuole 1
plasma membrane 2
golgi 1

Predictors

GFP

MS/MS

Papers

golgi: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G015300.1
TraesCS1A01G340600.1
TraesCS1B01G019100.2
TraesCS1D01G013200.1
TraesCS1D01G342600.1
TraesCS2A01G311000.3
TraesCS2A01G518900.1
TraesCS2B01G327900.1
TraesCS2B01G547200.1
TraesCS2D01G309200.2
TraesCS2D01G520300.1
TraesCS3A01G274800.1
TraesCS3A01G313000.1
TraesCS3B01G158900.1
TraesCS3B01G308400.1
TraesCS3D01G141300.1
TraesCS3D01G274500.1
TraesCS7A01G141900.1
TraesCS7A01G515500.1
TraesCS7B01G044000.1
TraesCS7B01G432100.1
TraesCS7D01G143100.1
TraesCS7D01G506000.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G26550.1	TraesCS1A01G015300.1	AT3G11730.1	21798944
AT4G26550.1	TraesCS1B01G019100.2	AT3G11730.1	21798944
AT4G26550.1	TraesCS1D01G013200.1	AT3G11730.1	21798944
AT4G26550.1	TraesCS2A01G311000.3	AT3G11730.1	21798944
AT4G26550.1	TraesCS2B01G327900.1	AT3G11730.1	21798944
AT4G26550.1	TraesCS2D01G309200.2	AT3G11730.1	21798944
AT5G56020.1	TraesCS2A01G518900.1	AT1G15760.1	21798944
AT5G56020.1	TraesCS2B01G547200.1	AT1G15760.1	21798944
AT5G56020.1	TraesCS2D01G520300.1	AT1G15760.1	21798944
AT5G56020.1	TraesCS7A01G141900.1	AT1G15760.1	21798944
AT5G56020.1	TraesCS7A01G515500.1	AT1G15760.1	21798944
AT5G56020.1	TraesCS7B01G044000.1	AT1G15760.1	21798944
AT5G56020.1	TraesCS7B01G432100.1	AT1G15760.1	21798944
AT5G56020.1	TraesCS7D01G143100.1	AT1G15760.1	21798944
AT5G56020.1	TraesCS7D01G506000.1	AT1G15760.1	21798944
AT5G56020.1	TraesCS1A01G340600.1	AT3G16310.1	21798944
AT5G56020.1	TraesCS1D01G342600.1	AT3G16310.1	21798944
AT5G56020.1	TraesCS3A01G274800.1	AT3G16310.1	21798944
AT5G56020.1	TraesCS3A01G313000.1	AT3G16310.1	21798944
AT5G56020.1	TraesCS3B01G158900.1	AT3G16310.1	21798944
AT5G56020.1	TraesCS3B01G308400.1	AT3G16310.1	21798944
AT5G56020.1	TraesCS3D01G141300.1	AT3G16310.1	21798944
AT5G56020.1	TraesCS3D01G274500.1	AT3G16310.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7B01G126600.1	Wheat	plasma membrane, plastid	98.68	98.68
TraesCS7A01G220800.1	Wheat	plastid	98.68	98.68
EER97654	Sorghum	plasma membrane, plastid	90.31	89.91
Os06t0300300-01	Rice	cytosol, endoplasmic reticulum, plasma membrane, plastid	83.7	83.33
Zm00001d007053_P001	Maize	plasma membrane	88.55	71.79
AT4G26550.1	Thale cress	plasma membrane	68.72	69.33
AT5G56020.1	Thale cress	plasma membrane	70.04	69.13
KRG98435	Soybean	plasma membrane	66.96	69.09
KRH46429	Soybean	plasma membrane	66.96	69.09
CDX94317	Canola	cytosol, peroxisome, plasma membrane	68.72	69.03
CDX89326	Canola	cytosol, peroxisome, plasma membrane	68.72	69.03
Bra026423.1-P	Field mustard	plasma membrane	68.72	69.03
GSMUA_Achr3P04250_001	Banana	plasma membrane	68.72	67.83
TraesCS7D01G377300.1	Wheat	plasma membrane, plastid	67.4	67.4
CDX92816	Canola	plasma membrane	68.28	66.81
VIT_19s0015g01110.t01	Wine grape	cytosol, peroxisome, plasma membrane, plastid	68.28	66.81
CDY42730	Canola	plasma membrane	68.28	66.52
PGSC0003DMT400057335	Potato	plasma membrane	68.28	66.52
Solyc07g065850.2.1	Tomato	plasma membrane	68.28	66.52
CDY06543	Canola	endoplasmic reticulum, plasma membrane, vacuole	27.31	41.89
Bra019100.1-P	Field mustard	cytosol	66.52	33.41

Protein Annotations

EnsemblPlants:TraesCS7D01G221300.1	EnsemblPlantsGene:TraesCS7D01G221300	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0016020
GO:GO:0016021	GO:GO:0016192	InterPro:Vesicle_transpt_Got1/SFT2	InterPro:Vesicle_transpt_SFT2	PANTHER:PTHR23137	PANTHER:PTHR23137:SF10
PFAM:PF04178	SEG:seg	TMHMM:TMhelix	MapMan:35.2	:	:

Description

No Description!

Coordinates

chr7D:-:182336185..182339244

Molecular Weight (calculated)

24251.5 Da

IEP (calculated)

9.123

GRAVY (calculated)

0.588

Length

227 amino acids

Sequence
(BLAST)

001: MQKTAQSWFT GGTASPSTAA ESQPSLLADW NSYAATRSDV SSSSPLPFDI EAAVRSANDT VSGTFNVMSK GVRELPGSFQ GATSSFPSGK ALMYFGLFLA
101: TGIFFVFIAF TLFLPVMVLM PQKFAICFTL GCALIIASLF ALKGPANQLA HMTSKERLPF TVGFTGCMVG TIYVSMVLHS YFLSVIFSIL QVLALAYYTI
201: SYFPGGSSGL KFLSSSLLSP VSRIFSS

Best Arabidopsis Sequence Match ( AT4G26550.1 )
(BLAST)

001: MSQGWFSMGG SSTVDQQQQS GSSLLADWNS YAASRDFEES GGSFGFDIES AVRSANDTVS GTFSVVSKGV RDIPGSLQSA TSSMPSGKAL MYFGLLLASG
101: VFFIFIAFTM FLPVMVLMPQ KFAICFTLGC GFIIGSFFAL RGPKNQLAHM SSMERLPSTL GFIATMVGTI YVSMVLHSYI LSVLFSVLQV LALVYYCISY
201: FPGGSSGMRF LSSALTSSAL RVFGR

Arabidopsis Description

Vesicle transport protein [Source:UniProtKB/TrEMBL;Acc:A0A178UYE8]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.