Factsheet for Zm00001d037494_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid, extracellular, cytosol

Predictor Summary:

extracellular 2
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular, plastid
Any Predictor:	cytosol, secretory
MultiLoc:	extracellular
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d013817_P001
Zm00001d016727_P001
Zm00001d018662_P001
Zm00001d021861_P001
Zm00001d025020_P001
Zm00001d027680_P003
Zm00001d032483_P001
Zm00001d032568_P001
Zm00001d033054_P001
Zm00001d033664_P001
Zm00001d040150_P001
Zm00001d048402_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G15760.1	Zm00001d013817_P001	AT3G20510.1	21798944
AT1G15760.1	Zm00001d033054_P001	AT3G20510.1	21798944
AT1G15760.1	Zm00001d033664_P001	AT4G09580.1	21798944
AT1G15760.1	Zm00001d016727_P001	AT4G14950.1	21798944
AT1G15760.1	Zm00001d021861_P001	AT4G14950.1	21798944
AT1G15760.1	Zm00001d040150_P001	AT4G14950.1	21798944
AT1G15760.1	Zm00001d018662_P001	AT5G43460.1	21798944
AT1G15760.1	Zm00001d025020_P001	AT5G43460.1	21798944
AT1G15760.1	Zm00001d027680_P003	AT5G43460.1	21798944
AT1G15760.1	Zm00001d032483_P001	AT5G43460.1	21798944
AT1G15760.1	Zm00001d032568_P001	AT5G43460.1	21798944
AT1G15760.1	Zm00001d048402_P001	AT5G43460.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU75953	Sorghum	cytosol	61.73	56.82
Zm00001d045137_P001	Maize	plastid	39.09	55.56
TraesCS7A01G141900.1	Wheat	cytosol	41.15	43.48
TraesCS7D01G143100.1	Wheat	cytosol	41.15	43.1
HORVU7Hr1G029260.1	Barley	cytosol	41.15	42.92
TraesCS7B01G044000.1	Wheat	cytosol	40.33	42.79
GSMUA_Achr9P26950_001	Banana	cytosol	22.22	35.06
Zm00001d036740_P001	Maize	cytosol	28.81	34.83
Zm00001d002096_P001	Maize	cytosol	27.98	33.17
Zm00001d046580_P001	Maize	cytosol	27.57	31.75
GSMUA_Achr8P14710_001	Banana	cytosol	22.63	31.25
GSMUA_Achr8P17040_001	Banana	cytosol	21.81	30.11
CDX87319	Canola	cytosol	19.75	27.12
CDY39968	Canola	cytosol	19.75	27.12
Bra035174.1-P	Field mustard	cytosol	19.75	27.12
KRH23610	Soybean	cytosol	21.4	27.08
GSMUA_Achr1P09970_001	Banana	cytosol	21.4	27.08
KRH09696	Soybean	cytosol	21.81	27.04
GSMUA_Achr8P25150_001	Banana	cytosol	20.99	26.84
CDX67952	Canola	cytosol	20.16	26.2
Bra003571.1-P	Field mustard	cytosol	20.16	26.2
Os06t0179100-00	Rice	cytosol, nucleus	32.51	26.07
Solyc03g117340.1.1	Tomato	cytosol	19.34	25.97
Bra026110.1-P	Field mustard	cytosol	21.4	25.74
CDX79380	Canola	cytosol	20.16	25.26
CDY36586	Canola	nucleus	20.99	25.25
AT1G80520.1	Thale cress	nucleus	19.75	25.0
GSMUA_Achr4P09380_001	Banana	cytosol	19.34	24.87
CDY61373	Canola	cytosol	20.58	24.75
PGSC0003DMT400073434	Potato	cytosol	13.58	24.63
PGSC0003DMT400073435	Potato	cytosol	19.34	24.61
PGSC0003DMT400084778	Potato	nucleus	18.93	24.6
AT1G15760.1	Thale cress	nucleus	20.16	24.26
Solyc06g068310.1.1	Tomato	cytosol	18.93	23.83
VIT_09s0002g08420.t01	Wine grape	golgi, plasma membrane	22.22	22.98
KRH47406	Soybean	cytosol	18.93	22.66
Solyc03g117310.1.1	Tomato	cytosol	19.34	22.38
PGSC0003DMT400036834	Potato	nucleus	18.93	21.9
AT2G12462.1	Thale cress	cytosol	22.22	21.69
VIT_11s0118g00550.t01	Wine grape	cytosol	20.99	20.32
Bra013153.1-P	Field mustard	cytosol	20.58	20.16
CDX93107	Canola	cytosol	20.58	20.16
CDY50403	Canola	cytosol	20.58	20.16
PGSC0003DMT400078859	Potato	cytosol	20.99	20.16
Solyc07g007350.1.1	Tomato	cytosol	20.99	20.0
KRH44503	Soybean	cytosol	16.46	18.43
KRH20227	Soybean	cytosol	19.75	16.27
KRH12842	Soybean	cytosol, nucleus, plastid	18.93	16.2
KRH37823	Soybean	nucleus	19.34	16.04
KRH03583	Soybean	nucleus	19.34	14.78

Protein Annotations

EMBL:BT039727	EnsemblPlants:Zm00001d037494_P001	EnsemblPlants:Zm00001d037494_T001	EnsemblPlantsGene:Zm00001d037494	EntrezGene:100272899	Gene3D:1.10.150.50
InterPro:SAM/pointed_sf	PANTHER:PTHR33915	PANTHER:PTHR33915:SF3	ProteinID:AQK84106.1	SEG:seg	SUPFAM:SSF47769
UniParc:UPI00017B835E	UniProt:B4FRI9	MapMan:35.2	:	:	:

Description

Sterile alpha motif (SAM) domain-containing protein

Coordinates

chr6:+:127256992..127257723

Molecular Weight (calculated)

26564.8 Da

IEP (calculated)

9.038

GRAVY (calculated)

-0.240

Length

243 amino acids

Sequence
(BLAST)

001: MDWYAWLCRA GLHPDVAFEY ALLFARNELG ATDVRHLDHD FLLSMGVAVA KHRLEILKLA RKETSSHGRA AAITVLPWRA TRLLAAAVHR SASSALGRLR
101: ASVSRGQDRD RDRARAAAAV LATPRLPLLR HRGGRVAHSW SKIASPVAIR GGKPRALPML TRISKPVVLT NSCADKWRGD GAAVKTLPAP AGSIAACLES
201: TDVCSCDEYE DGEVSDEEEV VVKHSGDGEE MRWESMFQDL KPN

Best Arabidopsis Sequence Match ( AT1G15760.1 )
(BLAST)

001: MEDWWFSWLS RTNLEPSLIH EYGLSFSQNE LEHEDISYFD HEFLQSMGIS IAKHRLEILK LARRDRKNSP PLTSRSISRV VTAIKKTRKC LSDHVRAWIR
101: REEESASSRA LVLVPKKTSN GIGKWRGGFL KRNKRSVMPS NGNGGLEKQE RLLLTNGTPC RIDSFSSPMV FDYSFKDEKL YAQDTYFEDI KWDSMFQNLK
201: PT

Arabidopsis Description

At1g15760 [Source:UniProtKB/TrEMBL;Acc:Q9LMQ8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.