Factsheet for Zm00001d021861_P001

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, cytosol, plasma membrane

Predictor Summary:

peroxisome 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
golgi 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, peroxisome, plasma membrane
Any Predictor:	peroxisome, secretory
MultiLoc:	peroxisome
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d008871_P001
Zm00001d010783_P001
Zm00001d016570_P001
Zm00001d017390_P001
Zm00001d025939_P003
Zm00001d036342_P001
Zm00001d038803_P001
Zm00001d049553_P001
Zm00001d050563_P001
Zm00001d051288_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G14950.1	Zm00001d016570_P001	AT1G27300.1	21798944
AT4G14950.1	Zm00001d050563_P001	AT1G27300.1	21798944
AT4G14950.1	Zm00001d008871_P001	AT3G16310.1	21798944
AT4G14950.1	Zm00001d010783_P001	AT3G16310.1	21798944
AT4G14950.1	Zm00001d038803_P001	AT3G16310.1	21798944
AT4G14950.1	Zm00001d017390_P001	AT3G60600.1	21798944
AT4G14950.1	Zm00001d025939_P003	AT3G60600.1	21798944
AT4G14950.1	Zm00001d036342_P001	AT3G60600.1	21798944
AT4G14950.1	Zm00001d049553_P001	AT3G60600.1	21798944
AT4G14950.1	Zm00001d051288_P001	AT3G60600.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER99579	Sorghum	plasma membrane	91.79	90.05
Zm00001d016727_P001	Maize	endoplasmic reticulum, extracellular, plasma membrane	34.06	83.93
Zm00001d040150_P001	Maize	endoplasmic reticulum, plasma membrane	31.64	76.16
TraesCS2B01G225100.1	Wheat	plasma membrane	72.71	70.99
TraesCS2D01G205700.1	Wheat	plasma membrane	72.46	70.75
TraesCS2A01G197700.1	Wheat	plasma membrane	71.98	70.12
Os07t0571500-00	Rice	plasma membrane	71.98	69.79
Bra039706.1-P	Field mustard	plasma membrane	48.79	57.39
CDY22723	Canola	plasma membrane	48.55	57.1
GSMUA_AchrUn_...	Banana	plasma membrane	52.17	56.25
HORVU2Hr1G038330.2	Barley	cytosol, plasma membrane, plastid	72.46	56.07
GSMUA_Achr3P29660_001	Banana	plasma membrane	57.73	55.97
AT1G05360.1	Thale cress	plasma membrane	56.04	55.77
KRH27628	Soybean	cytosol, nucleus, plasma membrane	55.31	55.18
KRH77865	Soybean	golgi, plastid, vacuole	56.28	54.82
CDY10028	Canola	endoplasmic reticulum, plasma membrane, vacuole	54.59	54.2
CDY59789	Canola	mitochondrion, plasma membrane, plastid, vacuole	54.59	54.07
Bra032466.1-P	Field mustard	mitochondrion, plasma membrane, plastid, vacuole	54.59	54.07
AT4G14950.1	Thale cress	cytosol, endoplasmic reticulum, peroxisome	53.62	53.37
Zm00001d048902_P004	Maize	plasma membrane	55.8	53.35
Bra036917.1-P	Field mustard	plasma membrane	48.79	52.6
Solyc01g099140.2.1	Tomato	peroxisome	53.62	52.36
CDY54866	Canola	plasma membrane, plastid	53.38	52.25
PGSC0003DMT400063650	Potato	cytosol, nucleus, peroxisome	53.38	52.12
CDY09041	Canola	plasma membrane	53.86	51.86
VIT_05s0020g03160.t01	Wine grape	plasma membrane	54.59	51.48
Zm00001d043275_P002	Maize	mitochondrion, plasma membrane	54.83	50.0
Solyc09g075850.2.1	Tomato	golgi, peroxisome, plasma membrane	50.72	49.53
PGSC0003DMT400081427	Potato	golgi, peroxisome, plasma membrane	49.76	48.58
CDY50267	Canola	plastid	42.03	48.2
GSMUA_Achr6P25070_001	Banana	cytosol, peroxisome, plasma membrane	46.38	48.0
CDX93269	Canola	mitochondrion	10.14	47.19
GSMUA_Achr6P25060_001	Banana	extracellular	17.15	35.86

Protein Annotations

EnsemblPlants:Zm00001d021861_P001	EnsemblPlants:Zm00001d021861_T001	EnsemblPlantsGene:Zm00001d021861	EntrezGene:100274223	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	InterPro:SNARE_assoc	PANTHER:PTHR10281	PANTHER:PTHR10281:SF48	PFAM:PF09335	ProteinID:ONM58906.1
ProteinID:ONM58908.1	SEG:seg	TMHMM:TMhelix	UniParc:UPI0002211792	UniProt:A0A096QQ51	MapMan:35.1

Description

Vacuole membrane protein KMS1

Coordinates

chr7:-:164834297..164840093

Molecular Weight (calculated)

46479.3 Da

IEP (calculated)

9.577

GRAVY (calculated)

0.307

Length

414 amino acids

Sequence
(BLAST)

001: MGPTAGSGED KAMSELRKKH RVDLERLTIT SRPFKTLSFF VLAIAQNLER TCSSVLKKGY QLKTAMLLVV ATWLLLMFTD GLNEKHLQEL FWYVRFGLWW
101: IILGVASSIG LGSGLHTFIM YLAPHVALFT IKAVQCGRVD LKSAPYDTIL LERRPSWLEK DCLQFGPPIY HETIPFSKIL QEVYLEAILW GIGTALGELP
201: PYFLSRTASM SGRIIDELED LDASISEGFL SSALRQAKRW LMSHSQYLSF TLILLLASVP NPLFDLAGIL CGQFNIPFWK FFLATLIGKA IVKVCIQTTL
301: VITLCNNQLL DLVEKRLIWA FSNVPGVASV LPSFVSKLKM DKNKFLSAHV AASASTSVKG KKWNLSFSLV WNTLVWLMVA NFIIQIVTST AQGYLRTQQE
401: REISKKLETE LSAS

Best Arabidopsis Sequence Match ( AT1G05360.1 )
(BLAST)

001: MGYGNRASSK TPAISGLREK HQQDLEKLTL TSQPFKTLRL FVVAVFLYVR RWSSYLLANV GWLILFCSIF VAFAALLVTL DGPHVKHVEE LSEYTRFGLW
101: WIFLGVASSI GLGSGLHTFV LYLGPHIALF TIKVMQCGRV DLKSAIYDTI QLKRSPSWLD KPCHEFGSPV FSSGVPLSSI LPQVQIEAIL WGLGTALGEL
201: PPYFISRAAS LSGGKMKELE TCSGDDNGFI AKRVNQIKSW LLSHSQYLNF FTILILASVP NPLFDLAGIM CGQFEKPFWE FFLATLIGKA IIKTHIQTVF
301: IICVCNNQLL DWVENELIYI LSFVPGFASA LPELTAKLRL MKEKYLIASP PVSSDINVKK WDLSFASVWN GVVWLMLLNF FGQIVTSTAQ RYLKKQQEEE
401: LDALTNKSSL TSKKSK

Arabidopsis Description

KMS2Vacuole membrane protein KMS2 [Source:UniProtKB/Swiss-Prot;Acc:F4I8Q7]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.