Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, golgi, plasma membrane
Predictor Summary:
Predictor Summary:
- mitochondrion 1
- golgi 2
- plasma membrane 3
- plastid 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- peroxisome 1
Predictors | GFP | MS/MS | Papers |
---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
Solyc09g075850.2.1 | Tomato | golgi, peroxisome, plasma membrane | 97.64 | 97.64 |
CDY22723 | Canola | plasma membrane | 56.84 | 68.47 |
Bra039706.1-P | Field mustard | plasma membrane | 56.6 | 68.18 |
KRH27628 | Soybean | cytosol, nucleus, plasma membrane | 64.39 | 65.78 |
AT4G14950.1 | Thale cress | cytosol, endoplasmic reticulum, peroxisome | 64.39 | 65.62 |
AT1G05360.1 | Thale cress | plasma membrane | 64.39 | 65.62 |
CDY59789 | Canola | mitochondrion, plasma membrane, plastid, vacuole | 64.39 | 65.31 |
Bra032466.1-P | Field mustard | mitochondrion, plasma membrane, plastid, vacuole | 64.39 | 65.31 |
CDY10028 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 64.15 | 65.23 |
CDY54866 | Canola | plasma membrane, plastid | 63.21 | 63.36 |
VIT_05s0020g03160.t01 | Wine grape | plasma membrane | 65.33 | 63.1 |
KRH77865 | Soybean | golgi, plastid, vacuole | 62.97 | 62.82 |
Bra036917.1-P | Field mustard | plasma membrane | 56.84 | 62.76 |
CDY09041 | Canola | plasma membrane | 62.26 | 61.4 |
CDY50267 | Canola | plastid | 49.53 | 58.17 |
PGSC0003DMT400063650 | Potato | cytosol, nucleus, peroxisome | 57.31 | 57.31 |
Zm00001d016727_P001 | Maize | endoplasmic reticulum, extracellular, plasma membrane | 21.7 | 54.76 |
TraesCS2D01G205700.1 | Wheat | plasma membrane | 52.59 | 52.59 |
TraesCS2A01G197700.1 | Wheat | plasma membrane | 52.59 | 52.47 |
Zm00001d040150_P001 | Maize | endoplasmic reticulum, plasma membrane | 21.23 | 52.33 |
Os07t0571500-00 | Rice | plasma membrane | 52.59 | 52.22 |
TraesCS2B01G225100.1 | Wheat | plasma membrane | 52.12 | 52.12 |
GSMUA_Achr6P25070_001 | Banana | cytosol, peroxisome, plasma membrane | 47.64 | 50.5 |
EER99579 | Sorghum | plasma membrane | 49.53 | 49.76 |
Zm00001d021861_P001 | Maize | cytosol, peroxisome, plasma membrane | 48.58 | 49.76 |
CDX93269 | Canola | mitochondrion | 9.2 | 43.82 |
HORVU2Hr1G038330.2 | Barley | cytosol, plasma membrane, plastid | 53.77 | 42.62 |
Protein Annotations
EnsemblPlants:PGSC0003DMT400081427 | EnsemblPlantsGene:PGSC0003DMG400031833 | EntrezGene:102593401 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
InterPro:SNARE_assoc | ncoils:Coil | PANTHER:PTHR10281 | PANTHER:PTHR10281:SF68 | PFAM:PF09335 | PGSC:PGSC0003DMG400031833 |
RefSeq:XP_006359916.1 | TMHMM:TMhelix | UniParc:UPI000296E299 | UniProt:M1D4R6 | MapMan:35.1 | : |
Description
Vacuole membrane protein [Source:PGSC_GENE;Acc:PGSC0003DMG400031833]
Coordinates
chr9:-:53334411..53342337
Molecular Weight (calculated)
47688.1 Da
IEP (calculated)
10.141
GRAVY (calculated)
0.217
Length
424 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSKKKTASQ KNSRSASPVK EMAISDHSAK HQKDLENLNL LTQPFRTLKL FSMAMMQYLM KLIAYLLSHR WCMLFSMIAG LALILLVTTD GPHVKHVEEV
101: LKHLQFGLWW VALGVASSIG LGSGLHTFVL YLGPHIALFT IKAMKCGRVD LKMAPYDTIQ FQKTPLWLHK DCSEFGPPVF SSSHGTSVPL SSILLQVQLE
201: AVLWGLGTAL GELPPYFISR AASLSGSKVE AMEELDTSSE NNGFITTRLT QMKRWFFSHA QCLNFFTILI LASVPNPLFD LAGIMCGQFG IPFWKFFFAT
301: LIGKAIIKTH IQTVFIISVC NNQLLYWVET KMIRMLSFIP GLETMLPKII AKLHSMKDKY MATKTPSTSN IKVNKWDFSF ASVWNGVVTI MLLNFFVKIV
401: NATAQRYLKR QQEEELASLK NKSS
101: LKHLQFGLWW VALGVASSIG LGSGLHTFVL YLGPHIALFT IKAMKCGRVD LKMAPYDTIQ FQKTPLWLHK DCSEFGPPVF SSSHGTSVPL SSILLQVQLE
201: AVLWGLGTAL GELPPYFISR AASLSGSKVE AMEELDTSSE NNGFITTRLT QMKRWFFSHA QCLNFFTILI LASVPNPLFD LAGIMCGQFG IPFWKFFFAT
301: LIGKAIIKTH IQTVFIISVC NNQLLYWVET KMIRMLSFIP GLETMLPKII AKLHSMKDKY MATKTPSTSN IKVNKWDFSF ASVWNGVVTI MLLNFFVKIV
401: NATAQRYLKR QQEEELASLK NKSS
001: MGSAGVASSS SDVAISALRE KHEKEVENLT LTTQPLNTLK LFVEATIQYI KRSISYLLAH GGWFILITTL LVVSGGLLVT VDGPHGKHVE EVLEYVRYGL
101: WWIALGVASS IGLGSGLHTF VLYLGPHIAL FTLKATLCGR VDLKSAPYDT IQLKRVPSWL DKSCSEFGPP LMISAAGSRV PLTSILPQVQ LEAILWGIGT
201: ALGELPPYFI SRAASISGST VDGMEELDGS STEDSGFMAT HLNRVKRWLL THSQHLNFFT VLVLASVPNP LFDLAGIMCG QFGIPFWEFF LATLIGKAII
301: KTHIQTIFII CVCNNQLLDW MENELIWILS HVPGLASMLP GLTAKLHAMK EKYIDAPSPV PSHIKVKKWD FSFASIWNGI VWLMLLNFFV KIVTATAQRH
401: LKKKQEKEMA TLTHSD
101: WWIALGVASS IGLGSGLHTF VLYLGPHIAL FTLKATLCGR VDLKSAPYDT IQLKRVPSWL DKSCSEFGPP LMISAAGSRV PLTSILPQVQ LEAILWGIGT
201: ALGELPPYFI SRAASISGST VDGMEELDGS STEDSGFMAT HLNRVKRWLL THSQHLNFFT VLVLASVPNP LFDLAGIMCG QFGIPFWEFF LATLIGKAII
301: KTHIQTIFII CVCNNQLLDW MENELIWILS HVPGLASMLP GLTAKLHAMK EKYIDAPSPV PSHIKVKKWD FSFASIWNGI VWLMLLNFFV KIVTATAQRH
401: LKKKQEKEMA TLTHSD
Arabidopsis Description
KMS1Vacuole membrane protein KMS1 [Source:UniProtKB/Swiss-Prot;Acc:Q5XF36]
SUBAcon: [endoplasmic reticulum,cytosol,peroxisome]
SUBAcon: [endoplasmic reticulum,cytosol,peroxisome]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.