CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 1
extracellular 5
endoplasmic reticulum 4
vacuole 4
plasma membrane 6
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	plastid, secretory
BaCelLo:	plastid
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX67837
CDX70995
CDX71796
CDX84933
CDX88803
CDX89063
CDX92368
CDX97739
CDY03907
CDY09128
CDY15722
CDY27605
CDY30157
CDY35676
CDY41153
CDY48365

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G14950.1	CDX84933	AT1G27300.1	21798944
AT4G14950.1	CDY03907	AT1G27300.1	21798944
AT4G14950.1	CDY15722	AT1G27300.1	21798944
AT4G14950.1	CDY27605	AT1G27300.1	21798944
AT4G14950.1	CDX97739	AT3G16310.1	21798944
AT4G14950.1	CDY30157	AT3G16310.1	21798944
AT4G14950.1	CDX67837	AT3G60600.1	21798944
AT4G14950.1	CDX71796	AT3G60600.1	21798944
AT4G14950.1	CDX89063	AT3G60600.1	21798944
AT4G14950.1	CDY41153	AT3G60600.1	21798944
AT4G14950.1	CDY48365	AT3G60600.1	21798944
AT4G14950.1	CDX70995	AT5G22290.1	21798944
AT4G14950.1	CDX88803	AT5G22290.1	21798944
AT4G14950.1	CDX92368	AT5G22290.1	21798944
AT4G14950.1	CDY09128	AT5G22290.1	21798944
AT4G14950.1	CDY35676	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY22723	Canola	plasma membrane	81.16	99.15
AT4G14950.1	Thale cress	cytosol, endoplasmic reticulum, peroxisome	87.21	90.14
CDY54866	Canola	plasma membrane, plastid	86.05	87.47
CDY50267	Canola	plastid	66.74	79.5
CDY59789	Canola	mitochondrion, plasma membrane, plastid, vacuole	67.44	69.38
CDY10028	Canola	endoplasmic reticulum, plasma membrane, vacuole	66.98	69.06
Solyc09g075850.2.1	Tomato	golgi, peroxisome, plasma membrane	62.79	63.68
PGSC0003DMT400081427	Potato	golgi, peroxisome, plasma membrane	61.4	62.26
Zm00001d016727_P001	Maize	endoplasmic reticulum, extracellular, plasma membrane	23.26	59.52
TraesCS2D01G205700.1	Wheat	plasma membrane	55.35	56.13
Zm00001d040150_P001	Maize	endoplasmic reticulum, plasma membrane	22.33	55.81
TraesCS2B01G225100.1	Wheat	plasma membrane	54.88	55.66
TraesCS2A01G197700.1	Wheat	plasma membrane	54.88	55.53
Os07t0571500-00	Rice	plasma membrane	53.72	54.1
EER99579	Sorghum	plasma membrane	53.02	54.03
Zm00001d021861_P001	Maize	cytosol, peroxisome, plasma membrane	51.86	53.86
GSMUA_Achr6P25070_001	Banana	cytosol, peroxisome, plasma membrane	48.37	52.0
CDX93269	Canola	mitochondrion	9.53	46.07
HORVU2Hr1G038330.2	Barley	cytosol, plasma membrane, plastid	55.35	44.49

Protein Annotations

EnsemblPlants:CDY09041	EnsemblPlantsGene:GSBRNA2T00001193001	GO:A0A078F6M9	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:SNARE_assoc	PANTHER:PTHR10281	PANTHER:PTHR10281:SF68	PFAM:PF09335	ProteinID:CDY09041	ProteinID:CDY09041.1
SEG:seg	TMHMM:TMhelix	UniParc:UPI0004EED1F5	UniProt:A0A078F6M9	MapMan:35.1	:

Description

BnaC08g09950DBnaC08g09950D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F6M9]

Coordinates

chrLK031992:+:48536..50628

Molecular Weight (calculated)

47926.3 Da

IEP (calculated)

8.677

GRAVY (calculated)

0.437

Length

430 amino acids

Sequence
(BLAST)

001: MNYLGVILKI TGSSFLLLGV SNVIFVKNFV ALREKHEKEV ENLTLTSQPL YTLKLFVEAT FLYIKRSILY LLAHGGWFML ITTLLVAFGV LLVTVDGPHG
101: KHVEELLEYV RYSLWWIALG VASSIGLGSG LHTFVLYLGP HIALFTLKAT QCGRVDLKSA PYDTIQLKRV PSWLDKSCSE FGPPLMVSAA GSRVPLTSIL
201: PQVQLEAILW GIGTALGELP PYFISRAASI SGSTVDGMEE LDASPSEDSG VMARFLNRIK RWLLTHSQHL NFFTVLVLAS VPNPLFDLAG IMCGQFGIPF
301: WEFFLATLIG KAIIKTHIQT IFIICVCNNQ LLDWMENELI WILSHVPGLA AALPGLTAKL HAMKEKYIDA PPPVPSHIKV KRWDFSFASI WNGIVWLMLL
401: NFFVKIVTAT AQRHLKKKQE KEISALTHLD

Best Arabidopsis Sequence Match ( AT4G14950.1 )
(BLAST)

001: MGSAGVASSS SDVAISALRE KHEKEVENLT LTTQPLNTLK LFVEATIQYI KRSISYLLAH GGWFILITTL LVVSGGLLVT VDGPHGKHVE EVLEYVRYGL
101: WWIALGVASS IGLGSGLHTF VLYLGPHIAL FTLKATLCGR VDLKSAPYDT IQLKRVPSWL DKSCSEFGPP LMISAAGSRV PLTSILPQVQ LEAILWGIGT
201: ALGELPPYFI SRAASISGST VDGMEELDGS STEDSGFMAT HLNRVKRWLL THSQHLNFFT VLVLASVPNP LFDLAGIMCG QFGIPFWEFF LATLIGKAII
301: KTHIQTIFII CVCNNQLLDW MENELIWILS HVPGLASMLP GLTAKLHAMK EKYIDAPSPV PSHIKVKKWD FSFASIWNGI VWLMLLNFFV KIVTATAQRH
401: LKKKQEKEMA TLTHSD

Arabidopsis Description

KMS1Vacuole membrane protein KMS1 [Source:UniProtKB/Swiss-Prot;Acc:Q5XF36]
SUBAcon: [endoplasmic reticulum,cytosol,peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.