Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, cytosol, plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 2
- peroxisome 1
- plasma membrane 3
- plastid 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- golgi 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_AchrUn_... | Banana | plasma membrane | 59.0 | 61.46 |
| Zm00001d016727_P001 | Maize | endoplasmic reticulum, extracellular, plasma membrane | 25.25 | 60.12 |
| GSMUA_Achr3P29660_001 | Banana | plasma membrane | 59.5 | 55.74 |
| Zm00001d040150_P001 | Maize | endoplasmic reticulum, plasma membrane | 23.75 | 55.23 |
| Bra039706.1-P | Field mustard | plasma membrane | 46.25 | 52.56 |
| CDY22723 | Canola | plasma membrane | 46.25 | 52.56 |
| KRH27628 | Soybean | cytosol, nucleus, plasma membrane | 53.5 | 51.57 |
| KRH77865 | Soybean | golgi, plastid, vacuole | 53.25 | 50.12 |
| AT1G05360.1 | Thale cress | plasma membrane | 52.0 | 50.0 |
| AT4G14950.1 | Thale cress | cytosol, endoplasmic reticulum, peroxisome | 52.0 | 50.0 |
| Bra032466.1-P | Field mustard | mitochondrion, plasma membrane, plastid, vacuole | 52.25 | 50.0 |
| CDY59789 | Canola | mitochondrion, plasma membrane, plastid, vacuole | 52.25 | 50.0 |
| CDY10028 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 52.0 | 49.88 |
| CDY54866 | Canola | plasma membrane, plastid | 51.25 | 48.46 |
| CDY09041 | Canola | plasma membrane | 52.0 | 48.37 |
| Solyc09g075850.2.1 | Tomato | golgi, peroxisome, plasma membrane | 51.25 | 48.35 |
| TraesCS2D01G205700.1 | Wheat | plasma membrane | 50.75 | 47.88 |
| Bra036917.1-P | Field mustard | plasma membrane | 45.75 | 47.66 |
| PGSC0003DMT400081427 | Potato | golgi, peroxisome, plasma membrane | 50.5 | 47.64 |
| TraesCS2B01G225100.1 | Wheat | plasma membrane | 50.5 | 47.64 |
| TraesCS2A01G197700.1 | Wheat | plasma membrane | 50.5 | 47.53 |
| VIT_05s0020g03160.t01 | Wine grape | plasma membrane | 52.0 | 47.38 |
| Os07t0571500-00 | Rice | plasma membrane | 50.5 | 47.31 |
| Zm00001d021861_P001 | Maize | cytosol, peroxisome, plasma membrane | 48.0 | 46.38 |
| PGSC0003DMT400063650 | Potato | cytosol, nucleus, peroxisome | 48.75 | 45.99 |
| CDY50267 | Canola | plastid | 41.5 | 45.98 |
| EER99579 | Sorghum | plasma membrane | 47.75 | 45.26 |
| Solyc01g099140.2.1 | Tomato | peroxisome | 47.75 | 45.05 |
| CDX93269 | Canola | mitochondrion | 9.75 | 43.82 |
| HORVU2Hr1G038330.2 | Barley | cytosol, plasma membrane, plastid | 50.25 | 37.57 |
| GSMUA_Achr6P25060_001 | Banana | extracellular | 8.25 | 16.67 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr6P25070_001 | EnsemblPlants:GSMUA_Achr6T25070_001 | EnsemblPlantsGene:GSMUA_Achr6G25070_001 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| PANTHER:PTHR10281 | PANTHER:PTHR10281:SF68 | SEG:seg | TMHMM:TMhelix | UniParc:UPI000295C26C | UniProt:M0TA03 |
| MapMan:35.1 | : | : | : | : | : |
Description
Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr6G25070_001]
Coordinates
chr6:-:25976734..25985349
Molecular Weight (calculated)
44651.3 Da
IEP (calculated)
9.444
GRAVY (calculated)
0.347
Length
400 amino acids
Sequence
(BLAST)
(BLAST)
001: MADMDRSAED LCPVIKELKE KHQRDLQKLT LTTQPFKILQ LFFFAILQYL KQTLLYVLKK GGWLMGLTIL LAAFGLFLVN GDGTNEKHVQ EFIRYTRFGL
101: WWVALGVASS IGLGSGLHTF VLYLGPHIAF FTIKAMKCGR VDLKSAPYDT IQLKRRPSWL EKNCSEFGPP LYQSLPGSLV KVPISSILPQ VQLEAILWGL
201: GTALGELPPY FISRAARLSG SNLEMEEISP ASSTDGFVSS SLKQIKIWLL THSQHLNFLT ILVLASVPNP LFDLAGIMCG QFGISFWKFF VATLIGKALI
301: KTHIQLPVFL LHPHCLSLPL PLLAFILATQ HDISTWCSSL QCVRAVVDAV SAAMAIHSTF RILRPPVHRL CHHHCCQSRP FFDILQQTRA TPSIAKSMIS
101: WWVALGVASS IGLGSGLHTF VLYLGPHIAF FTIKAMKCGR VDLKSAPYDT IQLKRRPSWL EKNCSEFGPP LYQSLPGSLV KVPISSILPQ VQLEAILWGL
201: GTALGELPPY FISRAARLSG SNLEMEEISP ASSTDGFVSS SLKQIKIWLL THSQHLNFLT ILVLASVPNP LFDLAGIMCG QFGISFWKFF VATLIGKALI
301: KTHIQLPVFL LHPHCLSLPL PLLAFILATQ HDISTWCSSL QCVRAVVDAV SAAMAIHSTF RILRPPVHRL CHHHCCQSRP FFDILQQTRA TPSIAKSMIS
001: MGSAGVASSS SDVAISALRE KHEKEVENLT LTTQPLNTLK LFVEATIQYI KRSISYLLAH GGWFILITTL LVVSGGLLVT VDGPHGKHVE EVLEYVRYGL
101: WWIALGVASS IGLGSGLHTF VLYLGPHIAL FTLKATLCGR VDLKSAPYDT IQLKRVPSWL DKSCSEFGPP LMISAAGSRV PLTSILPQVQ LEAILWGIGT
201: ALGELPPYFI SRAASISGST VDGMEELDGS STEDSGFMAT HLNRVKRWLL THSQHLNFFT VLVLASVPNP LFDLAGIMCG QFGIPFWEFF LATLIGKAII
301: KTHIQTIFII CVCNNQLLDW MENELIWILS HVPGLASMLP GLTAKLHAMK EKYIDAPSPV PSHIKVKKWD FSFASIWNGI VWLMLLNFFV KIVTATAQRH
401: LKKKQEKEMA TLTHSD
101: WWIALGVASS IGLGSGLHTF VLYLGPHIAL FTLKATLCGR VDLKSAPYDT IQLKRVPSWL DKSCSEFGPP LMISAAGSRV PLTSILPQVQ LEAILWGIGT
201: ALGELPPYFI SRAASISGST VDGMEELDGS STEDSGFMAT HLNRVKRWLL THSQHLNFFT VLVLASVPNP LFDLAGIMCG QFGIPFWEFF LATLIGKAII
301: KTHIQTIFII CVCNNQLLDW MENELIWILS HVPGLASMLP GLTAKLHAMK EKYIDAPSPV PSHIKVKKWD FSFASIWNGI VWLMLLNFFV KIVTATAQRH
401: LKKKQEKEMA TLTHSD
Arabidopsis Description
KMS1Vacuole membrane protein KMS1 [Source:UniProtKB/Swiss-Prot;Acc:Q5XF36]
SUBAcon: [endoplasmic reticulum,cytosol,peroxisome]
SUBAcon: [endoplasmic reticulum,cytosol,peroxisome]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.